Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
17-kDa HBP (Heparin-binding protein)
|
von Willebrand factor (VWF)
|
Glycoproteins
|
Binding
|
||||
|
17-kDa HBP (Heparin-binding protein)
|
Thrombospondin (TSP)
|
Glycoproteins
|
Binding
|
||||
|
17-kDa HBP (Heparin-binding protein)
|
Thrombospondin (TSP)
|
Glycoproteins
|
Binding
|
||||
|
18-kDa fimbrial adhesin
|
Galactose derivatives
|
Saccharides
|
HEp-2 cells
|
Gal
|
Binding
|
||
|
18-kDa proteins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
18-kDa proteins
|
unnamed ligand
|
Oligosaccharides
|
Gal(a1-4)Gal
|
Binding
|
|||
|
18-kDa proteins
|
unnamed ligand
|
Oligosaccharides
|
Mucos membranes of the genitourinary tract/rectum/oropharynx/conjunctiva
|
Gal(b1-4)GlcNAc(b1-4)Gal(b1-4)Glc
|
Binding
|
||
|
20K-fimbriae
|
GlcNAc sequence
|
Saccharides
|
Human colon carcinoma Caco-2 cell line
|
GlcNAc
|
Binding
|
||
|
33-kDa proteins
|
factor H (fH)
|
Glycoproteins
|
Binding
|
||||
|
35S-labeled or 125I-labeled proteins
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Dog small intestine
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
Displaying entries 31 - 40 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
