PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▼ | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
SBA (soybean agglutinin)
|
N-Acetylgalactosamine
|
Monosaccharides
|
Vero E6/P388D1 cells
|
GalNAc
|
Binding
|
||
DBA (Dolichos biflorus agglutinin)
|
N-Acetylgalactosamine
|
Monosaccharides
|
Vero E6/P388D1 cells
|
GalNAc
|
Binding
|
||
S-fimbriae
|
Sialyl galactoside units of cell surface glycoproteins
|
Glycoproteins
|
Vascular endothelial/epithelial cells of the choroid plexus, Ependyma cells lining the brain ventricles
|
NeuAc(a2-3)Gal(b1-4)Glc
|
Binding
|
||
Adhesins
|
D-Galactose
|
Monosaccharides
|
Vascular endothelial cells (only)
|
Gal
|
Binding
|
||
35S-labeled or 125I-labeled proteins
|
Glucosylceramide
|
Monoglycosylceramides
|
Various sources
|
Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Various sources
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Various sources
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Various sources
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Various sources
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Various sources
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01