Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▼ | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Unknown
|
Sialyl-3-Paragloboside (S-3-PG; α2,3-sialylparagloboside)
|
Monosialoglycosphingolipids
|
Human erythrocytes
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
unnamed ligand
|
Sialoglycosphingolipids
|
Frog brain
|
NeuAc(a2-3)Gal(b1-3)[NeuAc(a2-6)]GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
I-active Sialyl lactoisooctaosylceramide
|
Sialoglycosphingolipids
|
Human colon adenocarcinoma cells (WiDr )
|
Gal(a1-3)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
unnamed ligand
|
Sialoglycosphingolipids
|
Bovine buttermilk
|
Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Neutrophil-activating proteins (150-kDa)
|
I-active Sialyl lactoisooctaosylceramide
|
Sialoglycosphingolipids
|
Bovine erythrocytes
|
Gal(a1-3)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Neutrophil-activating proteins (150-kDa)
|
unnamed ligand
|
Sialoglycosphingolipids
|
Bovine buttermilk
|
Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Neutrophil-activating proteins (150-kDa)
|
I-active ganglioside
|
Sialoglycosphingolipids
|
Human placenta
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
unnamed ligand
|
Sialoglycosphingolipids
|
Frog brain
|
NeuAc(a2-3)Gal(b1-3)[NeuAc(a2-6)]GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
35S-labeled or 125I-labeled proteins
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Piglet intestine
|
HSO3(-3)Gal(b1-1)Cer
|
Not Binding
|
||
|
35S-labeled or 125I-labeled proteins
|
Sulfo-lactosylceramide (SM3)
|
Sulfoglycosphingolipids
|
Piglet intestine
|
HSO3(-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
Displaying entries 41 - 50 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
