GlyCosmos Portal

Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Database	Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB)	June 1, 2016

Species	Pathogen Adherence Molecule	Ligand Name	Ligand Feature	Target Source	Glycan Sequence ▲	Binding	PubMed ID
Neisseria gonorrhoeae	Lectin-like proteins (adhesin)	Fucosyl Asialo GM1	Oligoglycosylceramides	Gonorrhoeae patients	Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2468365
Actinomyces viscosus	Unknown	Fucosyl Asialo GM1	Oligoglycosylceramides	Mouse large intestine	Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Actinomyces naeslundii	Unknown	Fucosyl Asialo GM1	Oligoglycosylceramides	Mouse large intestine	Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Streptococcus pyogenes	Unknown	Fucosyl Asialo GM1	Oligoglycosylceramides		Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	3413084
Escherichia coli	Unknown	Fucosyl Asialo GM1	Oligoglycosylceramides		Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	3413084
Salmonella enteritidis	Unknown	Fucosyl Asialo GM1	Oligoglycosylceramides		Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	3413084
Mycoplasma pneumoniae	Unknown	Fucosyl Asialo GM1	Oligoglycosylceramides		Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	3413084
Salmonella milwaukee	Unknown	Fucosyl Asialo GM1	Oligoglycosylceramides		Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	3413084
Norovirus	Capsid proteins	Blood group H1 antigen	Oligosaccharides		Fuc(a1-2)Gal(b1-3)GlcNAc	Binding	18809496
Escherichia coli	F1C	H5 type 1 pentaglycosylceramide (lacto-series)	Oligoglycosylceramides	Human small intestine	Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer	Not Binding	11877427