PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule ▲ | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
35S-labeled or 125I-labeled proteins
|
Fucosyl Asialo GM1
|
Oligoglycosylceramides
|
Mouse small intestine
|
Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
35S-labeled or 125I-labeled proteins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Guinea pig erythrocytes
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
35S-labeled or 125I-labeled proteins
|
GM3(NeuAc)
|
Monosialoglycosphingolipids
|
Human brain
|
NeuAc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
GM3(NeuGc)
|
Monosialoglycosphingolipids
|
Piglet intestine
|
NeuGc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
GM1
|
Monosialoglycosphingolipids
|
Human brain
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
GM2(NeuAc)
|
Monosialoglycosphingolipids
|
Human brain
|
GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Piglet intestine
|
HSO3(-3)Gal(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
Sulfo-lactosylceramide (SM3)
|
Sulfoglycosphingolipids
|
Piglet intestine
|
HSO3(-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
Sulfo-gangliotetraosylceramide (Sulfo-GgO4)
|
Sulfoglycosphingolipids
|
Mouse small intestine
|
HSO3(-3)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
35S-labeled or 125I-labeled proteins
|
Lactosylceramide (d18:1-16:0/24:1)
|
Diosylceramides
|
Human granulocytes, Human erythrocytes
|
Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01