Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▲ | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Lectin-like proteins (adhesin)
|
H5 type 1 pentaglycosylceramide (lacto-series)
|
Oligoglycosylceramides
|
Gonorrhoeae patients
|
Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Lectin-like proteins (adhesin)
|
H5 type 1 pentaglycosylceramide (lacto-series)
|
Oligoglycosylceramides
|
Human skin
|
Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Unknown
|
H5 type 1 pentaglycosylceramide (lacto-series)
|
Oligoglycosylceramides
|
Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
H5 type 1 pentaglycosylceramide (lacto-series)
|
Oligoglycosylceramides
|
Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
Blood group H1 antigen (HSA)
|
Glycoproteins
|
Human serum albumin
|
Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
||
|
BabA (blood group antigen binding adhesin)
|
Blood group H1 antigen (HSA)
|
Glycoproteins
|
Fuc(a1-2)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
|||
|
Unknown
|
unnamed ligand
|
Oligosaccharides
|
Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]Gal
|
Binding
|
|||
|
Unknown
|
Lewis b (Leb-HSA)
|
Glycoproteins
|
Human serum albumin
|
Fuc(a1-2)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
||
|
Unknown
|
unnamed ligand
|
Oligosaccharides
|
Intestinal cells
|
Fuc(a1-2)Gal(b1-4)GlcNAc
|
Binding
|
||
|
Unknown
|
unnamed ligand
|
Oligoglycosylceramides
|
Dog small intestine
|
Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(b1-3)Glc(b1-1)Cer
|
Not Binding
|
Displaying entries 51 - 60 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
