PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Toxin A
|
α-Gal on Fab of IgM(λ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
||
Unknown
|
Blood group B antigen (B-tri-HSA)
|
Glycoproteins
|
Human serum albumin
|
Gal(a1-3)[Fuc(a1-2)]Gal(b)-O-APE
|
Binding
|
||
Unknown
|
Blood group A antigen (A-tri-HSA)
|
Glycoproteins
|
Human serum albumin
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b)-O-APE
|
Binding
|
||
Unknown
|
Blood group A antigen (A-tri-HSA)
|
Glycoproteins
|
Saliva
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b)-O-APE
|
Binding
|
||
Unknown
|
α-Gal on Fab of IgA(κ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
||
Unknown
|
α-Gal on Fab of IgM(λ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
||
gp120
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Human colonic epithelial cell lines (HT-29/HT-29-A7/HT-29-D4)
|
Gal(b1-1)Cer
|
Binding
|
||
Lectin-like proteins (adhesin)
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Sputa of cystic fibrosis patients
|
Gal(b1-1)Cer
|
Binding
|
||
S-fimbriae (SfaA)
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Brain endothelial cells
|
Gal(b1-1)Cer
|
Binding
|
||
HIV surface glycoprotein gp120
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Neural cell lines
|
Gal(b1-1)Cer
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01