GlyCosmos Portal

Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Database	Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB)	June 1, 2016

Species	Pathogen Adherence Molecule	Ligand Name ▼	Ligand Feature	Target Source	Glycan Sequence	Binding	PubMed ID
Actinomyces naeslundii	Unknown	unnamed ligand	Oligosaccharides		Gal(b1-3)GalNAc	Binding	12628483
Streptococcus pneumoniae	Unknown	unnamed ligand	Saccharides		GlcNAc(b1-3)Gal	Binding	2885220
Actinomyces viscosus	Unknown	unnamed ligand	Sialoglycosphingolipids	Frog brain	NeuAc(a2-3)Gal(b1-3)[NeuAc(a2-6)]GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Lactobacillus johnsonii	Unknown	unnamed ligand	Sialoglycosphingolipids	Bovine buttermilk	Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)Glc(b1-1)Cer	Not Binding	11087711
Helicobacter pylori	Neutrophil-activating proteins (150-kDa)	unnamed ligand	Sialoglycosphingolipids	Bovine buttermilk	Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)Glc(b1-1)Cer	Not Binding	9228091
Actinomyces naeslundii	Unknown	unnamed ligand	Sialoglycosphingolipids	Frog brain	NeuAc(a2-3)Gal(b1-3)[NeuAc(a2-6)]GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Actinomyces viscosus	Unknown	unnamed ligand	Glycosphingolipids	Human meconium	Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Shigella dysenteriae	B subunit	unnamed ligand	Glycosphingolipids	Human meconium	Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	3543013
Actinomyces naeslundii	Unknown	unnamed ligand	Glycosphingolipids	Human meconium	Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461
Actinomyces viscosus	Unknown	unnamed ligand	Oligoglycosylceramides	Human kidney	GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	2358461