Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▼ | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
FimA (Lral family); localized to the tip of peritrichous surface fimbria
|
Salivary glycoprotein
|
Glycoproteins
|
Tooth surface
|
Binding
|
|||
|
Type 2-fimbriae
|
β-linked galactosamine
|
Saccharides
|
Tongue
|
GalNAc(b
|
Not Binding
|
||
|
Unknown
|
unknown carbohydrate ligand
|
Saccharides
|
Tongue
|
Binding
|
|||
|
F1C
|
Gb2 (Galabiosylceramide)
|
Diosylceramides
|
Synthetic
|
Gal(a1-4)Gal(b1-1)Cer
|
Not Binding
|
||
|
Tetanus toxin (Hc fragment)
|
GT1b analog
|
Trisialoglycosphingolipids
|
Synapse
|
Binding
|
|||
|
Unknown
|
GT1b analog
|
Trisialoglycosphingolipids
|
Synapse
|
Binding
|
|||
|
Adhesins
|
MUC1 mucin
|
Glycoproteins
|
Surface of chinese hamster ovary (CHO) cells
|
Binding
|
|||
|
Unknown
|
unnamed ligand
|
Oligosaccharides
|
Stomach
|
NeuAc(a2-3)Gal(b1-4)GlcNAc
|
Binding
|
||
|
Lectin-like proteins (adhesin)
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Sputa of cystic fibrosis patients
|
Gal(b1-1)Cer
|
Binding
|
||
|
Lectin-like proteins (adhesin)
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Sputa of cystic fibrosis patients
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
Displaying entries 71 - 80 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
