Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence ▼ | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Unknown
|
Sialyl-6-Paragloboside (S-6-PG; α2,6-sialylparagloboside)
|
Monosialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Hemagglutinin (HA)
|
Sialyl-6-Paragloboside (S-6-PG; α2,6-sialylparagloboside)
|
Monosialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Unknown
|
Sialyl-6-Paragloboside (S-6-PG; α2,6-sialylparagloboside)
|
Monosialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
MuV-HN
|
Glycans containing α2,6-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-2)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc
|
Not Binding
|
|||
|
MuV-HN
|
Glycans containing α2,6-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-3)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc
|
Not Binding
|
|||
|
Unknown
|
Glycoprotein with α2,6 N-linked sialic acid
|
Glycoproteins
|
NeuAc(a2-6)Gal(b1-4)GlcNAc
|
Binding
|
|||
|
MuV-HN
|
Glycans containing α2,6-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-6)Gal(b1-4)GlcNAc
|
Not Binding
|
|||
|
Residues 226 (leucine) and 228 (serine)
|
Sialic acid α2,6Galβ1,4GalNAc
|
Oligosaccharides
|
Human isolates
|
NeuAc(a2-6)Gal(b1-4)GalNAc
|
Binding
|
||
|
Unknown
|
NeuAc6-Lc4Cer (Sialyl lactotetraosylceramide)
|
Sialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Unknown
|
NeuAc6-Lc4Cer (Sialyl lactotetraosylceramide)
|
Sialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
Displaying entries 81 - 90 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
