Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source ▲ | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
SV40
|
GM1
|
Monosialoglycosphingolipids
|
(broad range)
|
Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
SSL5
|
Sialyl Lewis x (SLex) antigen
|
Oligosaccharides
|
(broad range)
|
NeuAc(a2-3)Gal(b1-4)
|
Binding
|
||
|
SSL11
|
Sialyl Lewis x (SLex) antigen
|
Oligosaccharides
|
(broad range)
|
NeuAc(a2-3)Gal(b1-4)
|
Binding
|
||
|
Capsid VP1
|
GD1a-GT1b analog
|
Sialoglycosphingolipids
|
(broad range)
|
Binding
|
|||
|
LecB
|
alpha-methyl-fucoside
|
Monosaccharides
|
A549 cells
|
Binding
|
|||
|
LecA
|
Alpha-methyl-galactoside
|
Monosaccharides
|
A549 cells
|
Binding
|
|||
|
PrsG (class III) G adhesins
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Acute cystitis patients
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
P-fimbriae
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Acute cystitis patients
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Hemagglutinin
|
Human and avian receptors containing sialylated glycoconjugates
|
Glycoconjugates
|
Airways
|
Binding
|
|||
|
Hemagglutinin H1(1934)
|
Human and avian receptors containing sialylated glycoconjugates
|
Glycoconjugates
|
Airways
|
Binding
|
Displaying entries 1 - 10 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
