GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 301 - 325 of 557 in total
Pathway Name Protein Name UniProt ID Gene Symbol ▲ Organism GlyTouCan ID
Integrin cell surface interactions
  • BSG
  • CD18
  • CD44
  • CD47
  • CDH1
  • COL13A1
  • COL16A1
  • COL18A1
  • COL4A1
  • COL4A3
  • COMP
  • F11R
  • FBN1
  • FN1
  • IBSP
  • ICAM1
  • ICAM3
  • ICAM5
  • ITGA1
  • ITGA10
  • ITGA11
  • ITGA2
  • ITGA2B
  • ITGA3
  • ITGA4
  • ITGA6
  • ITGA9
  • ITGAL
  • ITGAM
  • ITGAV
  • ITGAX
  • ITGB1
  • ITGB2
  • ITGB3
  • ITGB5
  • ITGB6
  • ITGB7
  • ITGB8
  • JAM1
  • JAM2
  • LDC
  • LOC534578
  • LOC616254
  • LUM
  • P2RX5
  • PECAM1
  • SPP1
  • THBS1
  • TNC
  • VCAM1
  • VTN
Bos taurus (cattle)
Signaling by ERBB4
  • BTC
  • ERBB3
  • ERBB4
  • EREG
  • HBEGF
  • NRG1
  • NRG2
  • NRG3
Bos taurus (cattle)
Intrinsic Pathway of Fibrin Clot Formation
  • C1QBP
  • F10
  • F11
  • F12
  • F2
  • F7
  • F8
  • F9
  • GP1BB
  • GP5
  • GP9
  • KLKB1
  • KNG1
  • PRCP
  • PROC
  • PROS
  • PROS1
  • SERPINA5
  • SERPIND1
  • SERPINE2
  • SERPING1
  • VWF
Bos taurus (cattle)
Terminal pathway of complement
  • C5
  • C7
  • C8A
  • C8B
  • C9
  • CLU
Bos taurus (cattle)
Reversible hydration of carbon dioxide
  • CA1
  • CA12
  • CA13
  • CA14
  • CA2
  • CA3
  • CA4
  • CA5A
  • CA5B
  • CA6
  • CA9
Bos taurus (cattle)
Metal sequestration by antimicrobial proteins
  • CAAF2
  • LCN2
  • LOC786350
  • LTF
  • S100A7
  • S100A8
  • S100A9
Bos taurus (cattle)
Cyclin A:Cdk2-associated events at S phase entry
  • CABLES1
  • CCNA1
  • CCNA2
  • CCNH
  • CDC25A
  • CDC25B
  • CDK2
  • CDK7
  • CDKN1A
  • CDKN1B
  • CDKN2
  • FZR1
  • MNAT1
  • RB1
  • WEE1
Bos taurus (cattle)
Cyclin E associated events during G1/S transition
  • CABLES1
  • CCNE1
  • CCNE2
  • CCNH
  • CDC25A
  • CDK2
  • CDK7
  • CDKN1A
  • CDKN1B
  • CDKN2
  • MNAT1
  • RB1
  • WEE1
Bos taurus (cattle)
Phase 0 - rapid depolarisation
  • CACNA1C
  • CACNA2D2
  • CACNB1
  • CACNB2
  • CACNG4
  • CACNG6
  • CACNG7
  • CACNG8
  • CALM
  • CAMK2A
  • CAMK2B
  • CAMK2D
  • FGF12
  • FGF13
  • FGF14
  • RANGRF
  • SCN11A
  • SCN1A
  • SCN1B
  • SCN2B
  • SCN3A
  • SCN3B
  • SCN4B
  • SCN5A
  • SCN8A
  • SCN9A
Bos taurus (cattle)
Phase 2 - plateau phase
  • CACNA1C
  • CACNA2D2
  • CACNB1
  • CACNB2
  • CACNG4
  • CACNG6
  • CACNG7
  • CACNG8
  • KCNE1
  • KCNE1L
  • KCNE2
  • KCNE3
  • KCNE4
  • KCNE5
  • KCNQ1
Bos taurus (cattle)
Ca2+ pathway
  • CALM
  • CAMK2A
  • CNA2
  • CNB
  • CTNNB1
  • FZD2
  • FZD3
  • FZD5
  • FZD6
  • GNAO1
  • GNAT2
  • GNB1
  • GNB2
  • GNB3
  • GNB4
  • GNB5
  • GNG10
  • GNG11
  • GNG12
  • GNG13
  • GNG2
  • GNG3
  • GNG4
  • GNG5
  • GNG7
  • GNG8
  • GNGT1
  • GNGT12
  • GNGT2
  • GNGT3
  • GNGT5
  • GNGT7
  • GNGT8
  • KRAS
  • LEF1
  • MAP3K7
  • NFATC1
  • NLK
  • PDE6A
  • PDE6B
  • PDE6G
  • PDEG
  • PLCB1
  • PPP3CA
  • PPP3CB
  • PPP3R1
  • TCF7L2
  • WNT11
  • WNT5A
Bos taurus (cattle)
Inactivation, recovery and regulation of the phototransduction cascade
  • CALM
  • CAMKMT
  • CNCG
  • CNCG1
  • CNGA1
  • CNGB1
  • FNTA
  • FNTB
  • GCAP1
  • GNAT1
  • GNB5
  • GNGT1
  • GRK1
  • GRK4
  • GRK7
  • GUCA1
  • GUCA1A
  • GUCA1B
  • GUCY2D
  • GUCY2F
  • LOC786620
  • METAP1
  • METAP2
  • NMT1
  • NMT2
  • PDE6A
  • PDE6B
  • PDE6G
  • PDEG
  • PPEF1
  • R9AP
  • RCV1
  • RCVRN
  • RGS9
  • RGS9BP
  • RHO
  • RHOK
  • SAG
Bos taurus (cattle)
VEGFR2 mediated vascular permeability
  • CALM
  • CAV1
  • CDH5
  • CTNNA1
  • CTNNB1
  • CTNND1
  • HSP90A
  • HSP90AA1
  • HSPCA
  • JUP
  • NOS3
  • PAK1
  • PAK2
  • PAK3
  • PDPK1
  • VAV1
  • VAV2
  • VAV3
Bos taurus (cattle)
RHO GTPases activate IQGAPs
  • CALM
  • CDC42
  • CDH1
  • CLIP1
  • CTNNA1
  • CTNNB1
  • IQGAP1
  • IQGAP2
  • IQGAP3
  • MEN1
Bos taurus (cattle)
Synthesis of IP3 and IP4 in the cytosol
  • CALM
  • INPP5B
  • INPP5D
  • INPP5J
  • INPPL1
  • ITPK1
  • ITPKA
  • ITPKB
  • ITPKC
  • OCRL
  • PLCB1
  • PLCB4
  • PLCD1
  • PLCD3
  • PLCE1
  • PLCG1
  • PLCG2
  • PLCH1
  • PLCZ
  • PLCZ1
  • PLD4
  • PTEN
Bos taurus (cattle)
Interferon gamma signaling
  • CAMK2A
  • CAMK2B
  • CAMK2D
  • ERK2
  • IFNG
  • IFNGR1
  • IFNGR2
  • JAK1
  • JAK2
  • MAPK1
  • MAPK3
  • PRKCD
  • PRKM1
  • PTPN6
  • SOCS1
  • SOCS3
  • STAT1
  • YB1
  • YBX1
Bos taurus (cattle)
Interleukin-35 Signalling
  • CANX
  • EBI3
  • IL12A
  • IL12RB2
  • IL27RA
  • IL6ST
  • JAK1
  • JAK2
  • STAT1
  • STAT3
  • STAT4
  • TYK2
  • canx
Bos taurus (cattle)
Dopamine Neurotransmitter Release Cycle
  • CASK
  • CPLX1
  • LIN7A
  • LIN7B
  • LIN7C
  • PPFIA1
  • PPFIA2
  • PPFIA3
  • PPFIA4
  • RAB3A
  • RIMS1
  • SLC18A2
  • SNAP25
  • STX1A
  • STXBP1
  • SYB2
  • SYN1
  • SYT1
  • UNC13B
  • UNC18A
  • VAMP2
Bos taurus (cattle)
Neurexins and neuroligins
  • CASK
  • DLG3
  • DLG4
  • DLGAP1
  • DLGAP3
  • DLGAP4
  • E41P
  • EPB41
  • EPB41L1
  • EPB41L2
  • EPB41L3
  • EPB41L5
  • GRM1
  • GRM5
  • HOMER1
  • HOMER2
  • HOMER3
  • LRRTM1
  • LRRTM2
  • LRRTM3
  • LRRTM4
  • NLGN1
  • NLGN2
  • NLGN3
  • NLGN4X
  • NRXN3
  • SHANK1
  • SHANK3
  • SORBS2
Bos taurus (cattle)
Interleukin-1 processing
  • CASP1
  • GSDMD
  • IGIF
  • IL18
  • IL1A
  • IL1B
  • LOC509956
  • NFKB1
  • NFKB2
  • RELA
Bos taurus (cattle)
Formation of the cornified envelope
  • CASP14
  • CDSN
  • CELA2A
  • DSC1
  • DSC2
  • DSC3
  • DSG1
  • DSG2
  • DSG3
  • DSG4
  • DSP
  • EVPL
  • JUP
  • KLK12
  • KLK13
  • KLK14
  • KLK5
  • KLK8
  • KLNC
  • LIPJ
  • LIPK
  • LIPM
  • LIPN
  • PI3
  • PKP1
  • PKP4
  • PPL
  • RPTN
  • SPINK5
  • SPINK6
  • SPINK9
  • TCHH
  • TGM1
Bos taurus (cattle)
Apoptotic cleavage of cell adhesion proteins
  • CASP3
  • CDH1
  • CTNNB1
  • DSG1
  • DSG2
  • DSG3
  • DSP
  • OCLN
  • PKP1
  • TJP1
  • TJP2
Bos taurus (cattle)
Regulation of NF-kappa B signaling
  • CASP8
  • CHUK
  • IKBIP
  • IKBKB
  • IKBKG
  • IKIP
  • IKKA
  • LRRC14
  • N4BP1
  • NEMO
  • NLRC5
  • NLRX1
  • RPS27A
  • TRAF2
  • TRAF6
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • USP14
Bos taurus (cattle)
Class C/3 (Metabotropic glutamate/pheromone receptors)
  • CASR
  • GABBR1
  • GABBR2
  • GPRC2A
  • GRM1
  • GRM2
  • GRM3
  • GRM4
  • GRM5
  • GRM6
  • GRM7
  • GRM8
  • LOC782957
  • PCAR1
  • T2R10C
  • T2R65A
  • TAS1R1
  • TAS1R2
  • TAS1R3
  • TAS2R1
  • TAS2R16
  • TAS2R3
  • TAS2R39
  • TAS2R4
  • TAS2R40
  • TAS2R42
  • TAS2R46
  • TAS2R60
  • TAS2R7
  • TAS2R8
Bos taurus (cattle)
Transcriptional regulation by RUNX2
  • CBFB
  • CCNB1
  • CCND1
  • CDC2
  • CDK1
  • CDK4
  • CDKN1
  • PPM1D
  • RUNX2
  • SOX9
Bos taurus (cattle)

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Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024