GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 376 - 400 of 557 in total
Pathway Name Protein Name UniProt ID ▲ Gene Symbol Organism GlyTouCan ID
Glycerophospholipid biosynthesis
  • AGK
  • CPNE1
  • CPNE3
  • CPNE6
  • CPNE7
Bos taurus (cattle)
Mitochondrial protein import
  • AAC1
  • AAC3
  • ANT1
  • ANT3
  • ATP5F1B
  • ATP5G1
  • ATP5G3
  • ATP5MC1
  • ATP5MC3
  • COQ2
  • FRDA
  • FXN
  • HSCB
  • HSPD1
  • LDHD
  • NDUFB8
  • OTC
  • PITRM1
  • SLC25A4
  • SLC25A6
  • TAFAZZIN
  • TAZ
  • TIM10
  • TIM22
  • TIM23
  • TIMM10
  • TIMM17A
  • TIMM17B
  • TIMM22
  • TIMM23
  • TIMM9
Bos taurus (cattle)
Amino acid transport across the plasma membrane
  • ASCT2
  • B0AT2
  • LAT4
  • NTT73
  • ORNT3
  • SATT
  • SLC16A10
  • SLC1A4
  • SLC1A5
  • SLC25A29
  • SLC36A1
  • SLC36A2
  • SLC36A4
  • SLC38A1
  • SLC38A2
  • SLC38A3
  • SLC38A4
  • SLC38A5
  • SLC3A1
  • SLC3A2
  • SLC43A1
  • SLC43A2
  • SLC6A15
  • SLC6A18
  • SLC6A19
  • SLC6A20
  • SLC6A6
  • SLC7A1
  • SLC7A10
  • SLC7A11
  • SLC7A3
  • SLC7A5
  • SLC7A6
  • SLC7A7
  • SLC7A8
  • SLC7A9
  • SNAT2
  • SNAT5
Bos taurus (cattle)
Iron uptake and transport
  • ABCG2
  • ACO1
  • CAND1
  • CP
  • CUL1
  • CYBRD1
  • FBXL5
  • FLVCR1
  • FTH
  • FTH1
  • FTL
  • FTMT
  • HCP1
  • HEPH
  • HMOX1
  • HMOX2
  • IREB2
  • LCN2
  • NEDD8
  • PCFT
  • RPS27A
  • SKP1
  • SKP1A
  • SLC11A2
  • SLC22A17
  • SLC40A1
  • SLC46A1
  • TF
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Bos taurus (cattle)
Interaction With Cumulus Cells And The Zona Pellucida
  • ADAM2
  • B4GALT1
  • GALT
  • GGTB2
  • LOC509761
  • OVGP1
  • ZP2
  • ZP3
  • ZP4
  • ZPB
Bos taurus (cattle)
Toll Like Receptor 4 (TLR4) Cascade
  • BPI
  • CD14
  • CD18
  • CD180
  • DNM1
  • DNM3
  • ITGAM
  • ITGB2
  • LBP
  • LY86
  • LY96
  • MD-2
  • PLCG2
  • PTPN4
  • TICAM2
  • TLR4
  • TRAM
Bos taurus (cattle)
DDX58/IFIH1-mediated induction of interferon-alpha/beta
  • HSP90A
  • HSP90AA1
  • HSP90AB1
  • HSPC3
  • HSPCA
  • HSPCB
  • IRF3
  • MAVS
  • TBK1
  • TOMM70
  • TOMM70A
  • Tom70
Bos taurus (cattle)
Cellular response to hypoxia
  • EPAS1
  • HIF1A
  • HIF1AN
Bos taurus (cattle)
Arachidonic acid metabolism
  • AWAT1
  • CPLA2
  • FAAH
  • PLA2G4
  • PLA2G4A
Bos taurus (cattle)
Hyaluronan uptake and degradation
  • CD44
  • CHP
  • CHP1
  • CRSBP1
  • GUSB
  • HEXA
  • HEXB
  • HMMR
  • HYAL1
  • HYAL2
  • HYAL3
  • LYVE1
  • STAB2
  • XLKD1
Bos taurus (cattle)
Highly calcium permeable postsynaptic nicotinic acetylcholine receptors
  • CHRNA1
  • CHRNA2
  • CHRNA3
  • CHRNA4
  • CHRNA5
  • CHRNA6
  • CHRNA7
  • CHRNA9
  • CHRNB2
  • CHRNB3
  • CHRNB4
Bos taurus (cattle)
Highly calcium permeable nicotinic acetylcholine receptors
  • CHRNA1
  • CHRNA2
  • CHRNA3
  • CHRNA4
  • CHRNA5
  • CHRNA6
  • CHRNB2
  • CHRNB3
  • CHRNB4
Bos taurus (cattle)
Highly sodium permeable postsynaptic acetylcholine nicotinic receptors
  • CHRNA3
  • CHRNA4
  • CHRNB2
  • CHRNB4
  • CHRND
  • CHRNE
  • CHRNG
Bos taurus (cattle)
Regulation of ornithine decarboxylase (ODC)
  • AZIN1
  • NQO1
  • OAZ1
  • OAZ2
  • ODC
  • ODC1
  • PSMA1
  • PSMA2
  • PSMA3
  • PSMA4
  • PSMA5
  • PSMA6
  • PSMA7
  • PSMA8
  • PSMB1
  • PSMB10
  • PSMB2
  • PSMB3
  • PSMB4
  • PSMB5
  • PSMB6
  • PSMB7
  • PSMB8
  • PSMB9
  • PSMC2
  • PSMC3
  • PSMC4
  • PSMC5
  • PSMC6
  • PSMD1
  • PSMD11
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD3
  • PSMD4
  • PSMD5
  • PSMD6
  • PSMD7
  • PSMD8
  • PSMD9
  • PSME1
  • PSME2
  • PSME4
  • PSMF1
  • SUG1
  • TRAP2
Bos taurus (cattle)
Toll Like Receptor 7/8 (TLR7/8) Cascade
  • TLR7
Bos taurus (cattle)
Signaling by ERBB4
  • BTC
  • ERBB3
  • ERBB4
  • EREG
  • HBEGF
  • NRG1
  • NRG2
  • NRG3
Bos taurus (cattle)
HSF1-dependent transactivation
  • AKT1S1
  • CAMK2A
  • CAMK2B
  • CAMK2D
  • CRYA2
  • CRYAB
  • DNAJB1
  • GBL
  • HSBP1
  • HSC70
  • HSF1
  • HSP70-1
  • HSP90A
  • HSP90AA1
  • HSP90AB1
  • HSPA1A
  • HSPA1L
  • HSPA8
  • HSPB8
  • HSPC3
  • HSPCA
  • HSPCB
  • LST8
  • MLST8
  • MTOR
  • RPTOR
Bos taurus (cattle)
Cross-presentation of particulate exogenous antigens (phagosomes)
  • CD36
  • CYBA
  • CYBB
  • ITGAV
  • ITGB5
  • NCF1
  • NCF2
  • NCF4
  • PAS4
Bos taurus (cattle)
Interconversion of nucleotide di- and triphosphates
  • AK1
  • AK2
  • AK3L1
  • AK4
  • AK5
  • AK6
  • AK7
  • AK8
  • AK9
  • CINAP
  • CMPK
  • CMPK1
  • CTPS
  • CTPS1
  • CTPS2
  • DCTD
  • DUT
  • GSR
  • GUK
  • GUK1
  • NME1-2
  • NME2
  • NME3
  • NME4
  • NUDT13
  • RRM1
  • RRM2
  • RRM2B
  • TXN
  • TXNRD1
  • TYMS
Bos taurus (cattle)
Progressive trimming of alpha-1,2-linked mannose residues from Man9/8/7GlcNAc2 to produce Man5GlcNAc2
  • MAN1A1
  • MAN1A2
  • MAN1C1
Bos taurus (cattle)
Transcriptional regulation by RUNX2
  • CBFB
  • CCNB1
  • CCND1
  • CDC2
  • CDK1
  • CDK4
  • CDKN1
  • PPM1D
  • RUNX2
  • SOX9
Bos taurus (cattle)
Regulation of RUNX2 expression and activity
  • CUL1
  • PSMA1
  • PSMA2
  • PSMA3
  • PSMA4
  • PSMA5
  • PSMA6
  • PSMA7
  • PSMB1
  • PSMB10
  • PSMB2
  • PSMB3
  • PSMB4
  • PSMB5
  • PSMB6
  • PSMB7
  • PSMB8
  • PSMB9
  • PSMC2
  • PSMC3
  • PSMC4
  • PSMC5
  • PSMC6
  • PSMD1
  • PSMD11
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD3
  • PSMD4
  • PSMD5
  • PSMD6
  • PSMD7
  • PSMD8
  • PSMD9
  • PSME1
  • PSME2
  • PSMF1
  • RPS27A
  • RUNX2
  • SKP1
  • SKP1A
  • SKP2
  • STUB1
  • SUG1
  • TRAP2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Bos taurus (cattle)
Cyclin E associated events during G1/S transition
  • CABLES1
  • CCNE1
  • CCNE2
  • CCNH
  • CDC25A
  • CDK2
  • CDK7
  • CDKN1A
  • CDKN1B
  • CDKN2
  • MNAT1
  • RB1
  • WEE1
Bos taurus (cattle)
Amine ligand-binding receptors
  • GPR143
  • LOC511136
  • LOC516101
  • TAAR1
  • TAAR2
  • TAAR3
  • TAAR5
  • TAAR9
Bos taurus (cattle)
RAF-independent MAPK1/3 activation
  • DUSP1
  • DUSP10
  • DUSP16
  • DUSP4
  • DUSP5
  • DUSP6
  • DUSP7
  • DUSP8
  • DUSP9
  • ERK2
  • MAPK1
  • MAPK3
  • PEA15
  • PRKM1
Bos taurus (cattle)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024