GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 126 - 150 of 252 in total
Pathway Name Protein Name UniProt ID ▼ Gene Symbol Organism GlyTouCan ID
A tetrasaccharide linker sequence is required for GAG synthesis
  • DC
  • Gpc2
  • Gpc5a
  • Gpc6a
  • SDC4
  • b3galt6
  • b3gat2
  • bcan
  • bgn
  • bgna
  • cb440
  • chunp6920
  • cspg2b
  • dcan
  • dcn
  • decorin
  • fb99b07
  • fc47a08
  • fe05f10
  • fi32a12
  • gal3st4
  • gpc1
  • gpc2
  • gpc3
  • gpc4
  • gpc4/6
  • gpc5
  • gpc5a
  • gpc6
  • gpc6a
  • gpc6l
  • im:6970974
  • kny
  • knypek
  • ncanb
  • sdc2
  • sdc4
  • sdc4l
  • si:ch1073-86a3.1
  • vcanb
  • wu:fb99b07
  • wu:fc47a08
  • wu:fc47g09
  • wu:fe05f10
  • wu:fi32a12
  • xylt1
  • zgc:103676
  • zgc:194854
  • zgc:91925
  • zgc:91989
Danio rerio (zebrafish)
Asparagine N-linked glycosylation
  • asgr1a
  • cldc1
  • si:ch211-125e6.12
  • si:ch211-125e6.13
  • si:ch211-154o6.6
  • si:ch73-361h17.1
  • si:ch73-86n18.1
Danio rerio (zebrafish)
Dectin-2 family
  • asgr1a
  • cd247l
  • cldc1
  • fynb
  • heg
  • illr1
  • illr4
  • illrL
  • im:7156386
  • si:ch211-125e6.12
  • si:ch211-125e6.13
  • si:ch211-154o6.6
  • si:ch73-361h17.1
  • si:ch73-86n18.1
  • zgc:152681
  • zgc:174904
Danio rerio (zebrafish)
Synthesis of Dolichyl-phosphate
  • dhdds
  • dolk
  • dolpp1
  • mvd
  • mvda
  • ngbr
  • nus1
  • srd5a3
  • wu:fd56c06
  • zgc:101585
  • zgc:77088
Danio rerio (zebrafish)
Reactions specific to the complex N-glycan synthesis pathway
  • CH73-301C19.1
  • chst10
  • fuca1.2
  • fut8a
  • mgat2
  • wu:fb02a09
  • zgc:162268
Danio rerio (zebrafish)
Receptor-type tyrosine-protein phosphatases
  • ppfia1
  • ptprf
Danio rerio (zebrafish)
VxPx cargo-targeting to cilium
  • arf4a
  • pkd2
  • rab11a
  • rab11fip3
  • rab3ip
  • rab8
  • rab8a
  • rho
  • wu:fi15h09
  • zfo2
  • zgc:101030
  • zgc:103679
  • zgc:110270
  • zgc:162699
  • zgc:174360
Danio rerio (zebrafish)
Glutamate Neurotransmitter Release Cycle
  • EAAT3
  • EAAT5A
  • MGC163045
  • SLC1A2a
  • SLC1A7
  • addicsin
  • arl6ip5b
  • fj55a04
  • glsl
  • rab3a
  • rab3ab
  • si:ch211-255d18.4
  • si:ch211-284b7.1
  • si:ch73-116b16.2
  • si:dkey-21n12.2
  • slc17a7
  • slc17a7a
  • slc1a1
  • slc1a2a
  • slc1a3b
  • slc1a7
  • slc1a7a
  • slc1a7b
  • slc38a2
  • snat2
  • syt1
  • syt1a
  • vamp2
  • vglut1
  • wu:fj41c01
  • wu:fj55a04
  • wu:fj61c06
  • wu:fk56d05
  • zgc:112516
  • zgc:73302
  • zgc:91959
  • zgc:92811
  • zgc:92899
  • zp22
Danio rerio (zebrafish)
Organic anion transporters
  • MGC163045
  • blu
  • cb229
  • fa07h09
  • sb:cb229
  • sb:cb809
  • si:ch211-200a16.4
  • slc17a5
  • slc17a6
  • slc17a6b
  • slc17a7
  • slc17a7a
  • slc17a8
  • slc25a10
  • slc25a10b
  • slc25a11
  • slc25a18
  • slc25a1b
  • slc25a22
  • slc25a55a
  • slc25a55b
  • slc5a5
  • slc5a8
  • slc5a8l
  • smcte
  • vglut1
  • vglut2.1
  • vglut2a
  • vglut3
  • wu:fa07h09
  • wu:fa12h05
  • wu:fb72h03
  • zgc:153077
  • zgc:56592
  • zgc:56614
  • zgc:86898
Danio rerio (zebrafish)
Phase 4 - resting membrane potential
  • KCNK18
  • TREK-2A
  • im:7150627
  • kcnj12b
  • kcnj14
  • kcnj2
  • kcnj2a
  • kcnk1
  • kcnk10a
  • kcnk13a
  • kcnk18
  • kcnk1a
  • kcnk2b
  • kcnk5a
  • si:ch211-120k19.4
  • si:dkey-121j17.4
  • si:dkey-63b1.2
  • trek-1
  • zgc:123268
  • zgc:123271
Danio rerio (zebrafish)
N-glycan trimming and elongation in the cis-Golgi
  • fi29h09
  • manea
  • mgat1b
  • si:ch211-152p11.3
  • wu:fi29h09
  • zgc:153912
  • zgc:92825
Danio rerio (zebrafish)
NoRC negatively regulates rRNA expression
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • MBD3
  • h2af1al
  • h2afvb
  • h2afvl
  • h2afx1
  • h2afza
  • h2av
  • h2ax1
  • h2az2a
  • h2az2b
  • h3-5
  • h3f3a
  • h3f3b.1
  • h3f3c
  • h3f3d
  • hist2h2l
  • im:6896397
  • mbd1
  • mbd1b
  • mbd2
  • mbd3a
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • wu:fa97f06
  • wu:fa98f07
  • wu:fi45g12
  • zK13A21.11
  • zK13A21.17
  • zgc:111862
  • zgc:112234
  • zgc:113984
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:56685
Danio rerio (zebrafish)
RNA Polymerase I Promoter Opening
  • ERK1
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • MBD3
  • fi06b09
  • h2af1al
  • h2afvb
  • h2afvl
  • h2afx1
  • h2afza
  • h2av
  • h2ax1
  • h2az2a
  • h2az2b
  • h3-5
  • h3f3a
  • h3f3b.1
  • h3f3c
  • h3f3d
  • hist2h2l
  • im:6896397
  • mapk3
  • mbd1
  • mbd1b
  • mbd2
  • mbd3a
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • si:dz180g5.3
  • ubtf
  • wu:fa97f06
  • wu:fa98f07
  • wu:fi06b09
  • wu:fi45g12
  • wu:fj38c10
  • zERK1
  • zK13A21.11
  • zK13A21.17
  • zgc:111862
  • zgc:112234
  • zgc:113984
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:56685
Danio rerio (zebrafish)
HDACs deacetylate histones
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • h2af1al
  • h2afx1
  • h2ax1
  • hdac10
  • hdac8
  • hist2h2l
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • zgc:112234
  • zgc:113984
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:56685
Danio rerio (zebrafish)
Estrogen-dependent gene expression
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • carm1
  • cited1
  • erbb4
  • erbb4a
  • esr
  • esr1
  • fc15h02
  • fi05d05
  • fj36b10
  • fkd7
  • forkhead-7
  • foxa1
  • gata3
  • gb:dq017620
  • gro1
  • groucho1
  • gta3
  • gtf2a1
  • gtf2a2
  • h2af1al
  • h2afvb
  • h2afvl
  • h2afx1
  • h2afza
  • h2av
  • h2ax1
  • h2az2a
  • h2az2b
  • h3-5
  • h3f3a
  • h3f3b.1
  • h3f3c
  • h3f3d
  • hist2h2l
  • im:6896397
  • jmjd2b
  • kat2b
  • kat5a
  • kdm4b
  • nr3a1
  • nrip1a
  • pg
  • pgr
  • pr
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch211-124a3.4
  • si:ch211-227n20.1
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • tbp
  • tf2a
  • tle3b
  • wu:fc15h02
  • wu:fi05d05
  • wu:fj36b10
  • zgc:112234
  • zgc:113984
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:55847
  • zgc:56685
Danio rerio (zebrafish)
PRC2 methylates histones and DNA
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • aebp2
  • cb633
  • dnmt3b
  • dnmt3bb.1
  • dnmt4
  • eed
  • ezh2
  • h2af1al
  • h2afvb
  • h2afvl
  • h2afx1
  • h2afza
  • h2av
  • h2ax1
  • h2az2a
  • h2az2b
  • h3-5
  • h3f3a
  • h3f3b.1
  • h3f3c
  • h3f3d
  • hist2h2l
  • im:6896397
  • jarid2b
  • jmj
  • mtf2
  • rbb4
  • rbb4l
  • rbbp4
  • rbbp7
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • suz12
  • suz12b
  • wu:cegs2813
  • zgc:112234
  • zgc:113984
  • zgc:136399
  • zgc:152758
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:56685
Danio rerio (zebrafish)
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
  • LOC100150038
  • LOC100329358
  • LOC100331412
  • LOC100332229
  • LOC103908680
  • LOC108181627
  • LOC562770
  • LOC570661
  • LOC794549
  • fj63d08
  • h2af1al
  • h2afvb
  • h2afvl
  • h2afx1
  • h2afza
  • h2av
  • h2ax1
  • h2az2a
  • h2az2b
  • h3-5
  • h3f3a
  • h3f3b.1
  • h3f3c
  • h3f3d
  • hist2h2l
  • im:6896397
  • prmt6
  • runx1
  • runxa
  • si:ch211-113a14.17
  • si:ch211-113a14.29
  • si:ch211-113a14.6
  • si:ch73-36p18.4
  • si:dkey-108k21.12
  • si:dkey-108k21.18
  • si:dkey-108k21.28
  • si:dkey-23a13.7
  • si:dkey-6n6.6
  • sin3aa
  • sin3b
  • wu:fj63d08
  • zgc:112234
  • zgc:113984
  • zgc:173585
  • zgc:173587
  • zgc:194998
  • zgc:56685
Danio rerio (zebrafish)
Apoptotic execution phase
  • bcap31
  • casp10
  • casp8l2
  • dnm1l
  • si:bz30i22.4
  • si:rp71-30i22.4
  • stk24a
  • zgc:163071
  • zgc:56389
Danio rerio (zebrafish)
Release of Hh-Np from the secreting cell
  • Gpc5a
  • disp2
  • gpc5
  • gpc5a
  • hha
  • ihh
  • ihha
  • notum1a
  • scube2
  • shh
  • shha
  • shhb
  • twhh
  • vhh1
  • you
Danio rerio (zebrafish)
Hedgehog 'on' state
  • CH211-265P12.8
  • LMP7
  • PA28-gamma
  • PSMA5
  • PSMB9A
  • PSMD10
  • Psma2
  • Su(fu)
  • Y
  • beta1
  • beta1ia
  • beta2i
  • beta5
  • beta5ia
  • cos2
  • cul3
  • cul3b
  • dre
  • dzip1
  • etID309919.2
  • fa93g07
  • fb17c09
  • fb20g04
  • fb49a10
  • fc34f08
  • fc85b05
  • fi39e05
  • fj42d12
  • fk89d05
  • gankyrin
  • gli2
  • gli2a
  • gli3
  • gpr161
  • hm:zeh0386
  • igu
  • ik:tdsubc_1f2
  • im:6909944
  • im:7137515
  • im:7142603
  • itch
  • itcha
  • itchb
  • kif7
  • lmp2
  • lmp7
  • macropain
  • numb
  • prosome
  • psma1
  • psma2
  • psma2a
  • psma2b
  • psma3
  • psma4
  • psma5
  • psma6b
  • psmb1
  • psmb10
  • psmb12
  • psmb13a
  • psmb2
  • psmb3
  • psmb5
  • psmb6
  • psmb8
  • psmb8a
  • psmb9
  • psmb9a
  • psmc1
  • psmc1a
  • psmc1b
  • psmc2
  • psmc4
  • psmc5
  • psmc6
  • psmd1
  • psmd10
  • psmd11b
  • psmd12
  • psmd13
  • psmd14
  • psmd3
  • psmd4
  • psmd4a
  • psmd6
  • psmd7
  • psmd8
  • psme1
  • psme2
  • psme3
  • rbx1
  • rps27a
  • sb:eu762
  • si:rp71-45k5.4
  • si:zc14a17.13
  • spop
  • spopl
  • spopla
  • sufu
  • tdsubc_1f2
  • uba52
  • ulk3
  • unp309
  • unp310
  • wu:fa14g03
  • wu:fa66f04
  • wu:fa91f08
  • wu:fa93g07
  • wu:faa49c06
  • wu:fb05d04
  • wu:fb11d10
  • wu:fb17c09
  • wu:fb19c08
  • wu:fb20g04
  • wu:fb23a11
  • wu:fb38a06
  • wu:fb49a10
  • wu:fb59c07
  • wu:fb98h03
  • wu:fc34f08
  • wu:fc49f02
  • wu:fc85b05
  • wu:fc85c10
  • wu:fe05d10
  • wu:fe38b10
  • wu:fi03c01
  • wu:fi39e05
  • wu:fj14c10
  • wu:fj22d05
  • wu:fj42d12
  • wu:fk89d05
  • wu:fu88b08
  • x
  • xx:tdsubc_1f2
  • y
  • yot
  • you-too
  • zgc:109707
  • zgc:109823
  • zgc:110363
  • zgc:110710
  • zgc:114044
  • zgc:123344
  • zgc:136444
  • zgc:162272
  • zgc:55284
  • zgc:55818
  • zgc:56176
  • zgc:56374
  • zgc:56377
  • zgc:56471
  • zgc:56516
  • zgc:63709
  • zgc:63995
  • zgc:65867
  • zgc:66168
  • zgc:77369
  • zgc:77482
  • zgc:86762
  • zgc:86820
  • zgc:86833
  • zgc:86851
  • zgc:86923
  • zgc:91842
  • zgc:92282
  • zgc:92464
  • zgc:92596
  • zgc:92716
  • zgc:92726
  • zgc:92791
Danio rerio (zebrafish)
Synthesis of PC
  • CH1073-272H17.1
  • LOC566726
  • PEMT
  • abhd3
  • aytl2
  • cbe
  • cept1
  • cept1b
  • ces2
  • ces2a
  • chat
  • chkb
  • chpt1
  • ctl2
  • ctl4
  • fc21g05
  • im:6908784
  • lpcat1
  • mfsd2ab
  • nls1b
  • pctp
  • pcyt1aa
  • pcyt1b
  • pcyt1ba
  • pemt
  • phospho1
  • si:ch211-218c17.2
  • si:dkey-38l12.2
  • slc44a2
  • slc44a4
  • stard10
  • wu:fc21g05
  • zgc:110237
  • zgc:123305
  • zgc:153863
  • zgc:195139
  • zgc:195150
  • zgc:55479
  • zgc:92800
Danio rerio (zebrafish)
Acyl chain remodelling of PS
  • cpla2
  • pla1a
  • pla2g10
  • pla2g12a
  • pla2g4
  • pla2g4a
  • rarres3l
  • zgc:162119
Danio rerio (zebrafish)
Acyl chain remodelling of PG
  • aytl2
  • cpla2
  • crls1
  • fc21c12
  • fj66b10
  • lpcat1
  • lpgat1
  • pla2g10
  • pla2g12a
  • pla2g3
  • pla2g4
  • pla2g4a
  • si:dkey-30h14.2
  • wu:fc21c12
  • wu:fj66b10
  • zgc:112278
  • zgc:162119
  • zgc:85909
Danio rerio (zebrafish)
Acyl chain remodelling of PI
  • cpla2
  • im:7138859
  • leng4
  • mboat7
  • oact7
  • pla2g10
  • pla2g12a
  • pla2g4
  • pla2g4a
  • plbd1
  • plbd1a
  • rarres3l
  • zgc:101699
  • zgc:162119
Danio rerio (zebrafish)
Acyl chain remodelling of PC
  • aytl1
  • aytl2
  • cpla2
  • im:7137034
  • im:7138859
  • lpcat1
  • lpcat2
  • pla2g10
  • pla2g12a
  • pla2g3
  • pla2g4
  • pla2g4a
  • plbd1
  • plbd1a
  • rarres3l
  • tmem86a
  • tmem86b
  • zgc:101699
  • zgc:113571
  • zgc:153124
  • zgc:162119
Danio rerio (zebrafish)

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