GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **251 - 275** of **360** in total

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Pathway Name	Protein Name	UniProt ID ▲	Gene Symbol	Organism	GlyTouCan ID
Transport of fatty acids	Apolipoprotein D Lipocalin 12 Lipocalin 15 Lipocalin 9 Lipocalin-1 Long-chain-fatty-acid--CoA ligase Odorant binding protein 2B long-chain-fatty-acid--CoA ligase long-chain-fatty-acid--CoA ligase	A0A287AE71 A0A287AN57 A0A287B9B7 A0A287BA72 A0A5G2QCL8 A0A5G2R0H6 A0A5K1TWC1 F1RKK0 P53715	APOD LCN1 LCN12 LCN15 LCN9 OBP2B SLC27A1 SLC27A4 SLC27A6	Sus scrofa (pig)
Digestion	Alkaline phosphatase Guanylate cyclase activator 2B Guanylin Guanylyl cyclase C Pirin	A0A287AF84 K7GKW6 O13009 P55204 P79897	GUC2C GUCA2 GUCA2A GUCA2B GUCY2C LOC100522404 PIR	Sus scrofa (pig)
Trafficking and processing of endosomal TLR	Cathepsin B Cathepsin K Cathepsin L Endoplasmin Legumain Procathepsin L Protein canopy homolog 3 Toll like receptor 7 Toll like receptor 8 Toll-like receptor 9 Unc-93 homolog B1, TLR signaling regulator	A0A287AFA5 A0A288CG39 A0A5G2QDA1 A0A5G2QE64 A0A8W4FL93 A1E295 A5GFQ5 F1S4J6 Q28944 Q5I2M3 Q9GLE3	CNPY3 CTSB CTSK CTSL CTSL1 HSP90B1 LGMN TLR7 TLR8 TLR9 TNRC5 UNC93B1	Sus scrofa (pig)
ER-Phagosome pathway	ABC-type antigen peptide transporter ABC-type antigen peptide transporter Beta-2-microglobulin Calreticulin Ig-like domain-containing protein Ig-like domain-containing protein Immunoglobulin C1-set domain-containing protein MHC class I antigen 2 MHC class I antigen 3 MHC class I antigen 6 MHC class I antigen 7 MHC class I antigen 8 Protein disulfide-isomerase Synaptosomal-associated protein Syntaxin 4 Vesicle-associated membrane protein 3 Vesicle-associated membrane protein 8	A0A287AFM5 A0A287AHK8 A0A287AJS8 A0A287B0R8 A0A287BEC7 A0A5G2R517 A0A8W4F753 A0A8W4FA01 A0A8W4FKP8 A0A8W4FNN4 A5D9J3 F1RIR2 F1RQ21 F1RTG6 F6QA08 P28491 Q07717	B2M CALR LOC100513601 PDIA3 SLA-2 SLA-3 SLA-6 SLA-7 SLA-8 SNAP23 STX4 TAP1 TAP2 VAMP3 VAMP8	Sus scrofa (pig)
DAP12 interactions	Beta-2-microglobulin C-type lectin domain family 5 member A C-type lectin domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Ig-like domain-containing protein Immunoglobulin C1-set domain-containing protein Killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 MHC class I antigen 2 MHC class I antigen 3 MHC class I antigen 6 MHC class I antigen 7 MHC class I antigen 8 Natural killer cells antigen CD94 Sialic acid binding Ig like lectin 15 Sialic acid-binding Ig-like lectin 5 Signal regulatory protein alpha TYRO protein tyrosine kinase-binding protein Triggering receptor expressed on myeloid cells 1 Triggering receptor expressed on myeloid cells 2	A0A287AFM5 A0A287AIY8 A0A287AJS8 A0A287B0R8 A0A287B4V1 A0A5G2Q878 A0A5G2R144 A0A5G2R517 A0A5G2RH45 A0A8W4F753 A0A8W4FKP8 A0A8W4FNN4 F1RP86 F1RTG6 F1RUY5 F1SQ28 I3LTK3 M9MMN6 Q07717 Q6TYI6 Q9GLF3 Q9TU45	B2M CLEC5A CLECSF5 DAP12 KIR2DL1 KLRD1 LOC100513601 LOC100513863 LOC100523789 MDL1 NCR2 SIGLEC14 SIGLEC15 SIGLEC5 SIRPA SLA-2 SLA-3 SLA-6 SLA-7 SLA-8 TREM1 TREM2 TYROBP	Sus scrofa (pig)
Antigen Presentation: Folding, assembly and peptide loading of class I MHC	78 kDa glucose-regulated protein ABC-type antigen peptide transporter ABC-type antigen peptide transporter Aminopeptidase Aminopeptidase Beta-2-microglobulin Calnexin Calreticulin Ig-like domain-containing protein Ig-like domain-containing protein Immunoglobulin C1-set domain-containing protein MHC class I antigen 2 MHC class I antigen 3 MHC class I antigen 6 MHC class I antigen 7 MHC class I antigen 8 Protein SEC13 homolog Protein disulfide-isomerase Protein transport protein SEC23 Protein transport protein Sec24B isoform a Protein transport protein Sec31A SEC24 homolog A, COPII coat complex component SEC24 homolog C, COPII coat complex component SEC24 homolog D, COPII coat complex component Small COPII coat GTPase SAR1B	A0A287AFM5 A0A287AJS8 A0A287AWH7 A0A287AXF5 A0A287B0R8 A0A287BIL8 A0A5G2QUP2 A0A5G2R517 A0A8W4F753 A0A8W4FIU8 A0A8W4FKP8 A0A8W4FNN4 A5D9J3 F1RQ21 F1RTG6 F1S129 F1S155 F1SHL3 F1SU53 F6QA08 I3L8L2 K7GLU6 P28491 Q07717 Q5PYH3	B2M CALR CANX ERAP1 ERAP2 HSPA5 LOC100513601 PDIA3 SAR1B SEC13 SEC23A SEC24A SEC24B SEC24C SEC24D SEC31A SLA-2 SLA-3 SLA-6 SLA-7 SLA-8 TAP1 TAP2	Sus scrofa (pig)
Terminal pathway of complement	Clusterin Clusterin Complement C5 Complement C7 Complement C8 alpha chain Complement C8 gamma chain Complement component C6 Complement component C8 beta chain Complement component C9	A0A287AFQ4 A0A287AIM8 A0A287AT36 A0A5G2R8T9 A0A5S8KLN1 A0A8W4F8A6 F1S788 F1SMJ1 Q29549	C5 C6 C7 C8A C8B C8G C9 CLU	Sus scrofa (pig)
PI-3K cascade:FGFR4	Fibroblast growth factor 23 Fibroblast growth factor 9 Fibroblast growth factor receptor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor GRB2 associated binding protein 1 Growth factor receptor bound protein 2 Klotho beta Multifunctional fusion protein Phosphatidylinositol 3-kinase regulatory subunit alpha isoform 2 Tyrosine-protein phosphatase non-receptor type phosphatidylinositol-4,5-bisphosphate 3-kinase	A0A287AFX3 A0A287AXR0 A0A287B3V5 A0A287BGK8 A0A480LMF4 A0A5G2QUY7 A0A5G2R7G2 A0A5K1UB41 B6E241 F1RM38 F1RY80 F1S3B8 F1SET9 F1SKR9 I3L560 I3LR27 K7GMT0 Q95L12	FGF1 FGF16 FGF18 FGF19 FGF2 FGF20 FGF23 FGF4 FGF6 FGF8 FGF9 FGFR4 Fgf4 GAB1 GRB2 KLB PIK3CA PIK3R1 PTPN11	Sus scrofa (pig)
Phospholipase C-mediated cascade; FGFR4	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma Fibroblast growth factor 23 Fibroblast growth factor 9 Fibroblast growth factor receptor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Klotho beta Multifunctional fusion protein	A0A287AFX3 A0A287AXR0 A0A287B3V5 A0A287BGK8 A0A5G2QUY7 A0A5G2R7G2 F1RM38 F1RY80 F1S3B8 F1SDV6 F1SET9 I3L560 I3LR27 Q95L12	FGF1 FGF16 FGF18 FGF19 FGF2 FGF20 FGF23 FGF4 FGF6 FGF8 FGF9 FGFR4 Fgf4 KLB PLCG1	Sus scrofa (pig)
FGFR4 ligand binding and activation	Fibroblast growth factor 23 Fibroblast growth factor 9 Fibroblast growth factor receptor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Multifunctional fusion protein	A0A287AFX3 A0A287AXR0 A0A287B3V5 A0A287BGK8 A0A5G2QUY7 A0A5G2R7G2 F1RM38 F1RY80 F1S3B8 F1SET9 I3LR27 Q95L12	FGF1 FGF16 FGF18 FGF19 FGF2 FGF20 FGF23 FGF4 FGF6 FGF8 FGF9 FGFR4 Fgf4	Sus scrofa (pig)
Regulation of necroptotic cell death	Baculoviral IAP repeat containing 2 Caspase-8 E2 ubiquitin-conjugating enzyme E3 ubiquitin-protein ligase CHIP FAS-associated death domain protein Flotillin-1 Flotillin Heat shock protein HSP 90-alpha Heat shock protein HSP 90-alpha Hsp90 co-chaperone Cdc37 Mixed lineage kinase domain like pseudokinase Polyubiquitin-C Programmed cell death 6 interacting protein Putative inhibitor of apoptosis Receptor interacting serine/threonine kinase 1 Syndecan binding protein TNF receptor-associated factor Tumor necrosis factor receptor type 1-associated DEATH domain protein Ubiquitin B Ubiquitin C Ubiquitin-ribosomal protein eL40 fusion protein Ubiquitin-ribosomal protein eS31 fusion protein non-specific serine/threonine protein kinase	A0A287AG10 A0A287AH24 A0A287ALN0 A0A287AZA7 A0A287BGG6 A0A287BPE4 A0A287BRT1 A0A2C9F3G2 A0A5G2QUT6 A0A5G2R6P0 A0A8I8C3K7 A7U5U2 F1RVZ4 F1S911 F1SGQ6 I3LH37 O02705 O62640 P0CG68 Q56VC2 Q56VC3 Q684M6 Q767L6	BIRC2 CASP8 CDC37 FADD FLOT1 FLOT2 HSP90A HSP90AA1 HSPCA MLKL PDCD6IP PIAP RIPK1 RIPK3 RPS27A SDCBP STUB1 TNFRSF6 TRADD TRAF2 UBA52 UBB UBC UBE2L3	Sus scrofa (pig)
RIPK1-mediated regulated necrosis	Flotillin-1 Flotillin Mixed lineage kinase domain like pseudokinase Programmed cell death 6 interacting protein Receptor interacting serine/threonine kinase 1 Syndecan binding protein non-specific serine/threonine protein kinase	A0A287AG10 A0A287AH24 A0A287ALN0 A0A287BRT1 A0A5G2R6P0 F1SGQ6 Q767L6	FLOT1 FLOT2 MLKL PDCD6IP RIPK1 RIPK3 SDCBP	Sus scrofa (pig)
Scavenging by Class H Receptors	Apolipoprotein B SPARC SPARC Stabilin 1 Stabilin 2	A0A287AG13 A0A287BJE5 A0A5G2R6P1 F1SRK1 P20112	APOB SPARC STAB1 STAB2	Sus scrofa (pig)
Inactivation, recovery and regulation of the phototransduction cascade	Calmodulin 3 Calmodulin-lysine N-methyltransferase Cyclic nucleotide gated channel subunit beta 1 G protein-coupled receptor kinase G protein-coupled receptor kinase Glycylpeptide N-tetradecanoyltransferase Glycylpeptide N-tetradecanoyltransferase Guanine nucleotide-binding protein subunit beta-5 Guanylate cyclase Guanylyl cyclase-activating protein 2 Methionine aminopeptidase 2 Methionine aminopeptidase Phosphodiesterase Recoverin Regulator of G-protein signaling 9-binding protein Regulator of G-protein signaling 9 Rhodopsin kinase GRK7 Rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma Rhodopsin Serine/threonine-protein phosphatase with EF-hands cGMP-gated cation channel alpha-1	A0A287AGE9 A0A287AL00 A0A287BB66 A0A480L5Q2 A0A5G2QFC3 A0A5G2QWK6 A0A5G2R841 A0A8W4FII8 F1RF40 F1RL89 F1RN35 F1RR06 F1RUU3 F1S5K4 F1S8P7 I3LJL1 I3LR47 I3LSP1 I3LTH3 O18766 Q8WP15	CALM3 CAMKMT CNGA1 CNGB1 GNB5 GRK1 GRK4 GRK7 GUCA1B GUCY2D METAP1 METAP2 NMT1 NMT2 PDE6A PDE6G PPEF1 RCVRN RGS9 RGS9BP RHO RHO1	Sus scrofa (pig)
Metabolism of steroid hormones	Sulfatase N-terminal domain-containing protein	A0A287AGF2	STS	Sus scrofa (pig)
trans-Golgi Network Vesicle Budding	ADP-ribosylation factor 1 Golgi brefeldin A resistant guanine nucleotide exchange factor 1 Synaptosomal-associated protein Syntaxin 4 Vesicle-associated membrane protein 2 Vesicle-associated membrane protein 8	A0A287AHK8 A0A5G2R276 A0A8W4F8A7 A0A8W4FA01 A0A8W4FPV1 F1RIR2	ARF1 GBF1 SNAP23 STX4 VAMP2 VAMP8	Sus scrofa (pig)
Regulation of CDH11 function	ADAM metallopeptidase domain 19 ADAM metallopeptidase domain 33 Angiomotin Angiopoietin-related protein 4 Cadherin 11 Catenin beta-1 Catenin delta 1 Junction plakoglobin Junction plakoglobin	A0A287AHV9 A0A287ASR6 A0A2C9F3E9 A0A5G2QJC4 F1RFU7 F1RWT7 F6QAP1 Q2TNK5 Q8WNW3	ADAM19 ADAM33 AMOT ANGPTL4 CDH11 CTNNB1 CTNND1 JUP Jup PGAR	Sus scrofa (pig)
TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway	B-cell activating factor Baculoviral IAP repeat containing 2 CD40 ligand Lymphotoxin beta receptor Lymphotoxin-alpha Lymphotoxin-beta Mitogen-activated protein kinase kinase kinase 14 Putative inhibitor of apoptosis TNF receptor superfamily member 11a TNF receptor superfamily member 12A TNF receptor superfamily member 13C TNF receptor-associated factor TNF receptor-associated factor TNF superfamily member 11 TNF superfamily member 12 Tumor necrosis factor receptor superfamily member 5	A0A287AJ47 A0A287AWB6 A0A5G2Q934 A0A8W4FAU5 A0A8W4FCV1 A0MTC9 F1RJX1 F1RR25 F1RVZ4 I3L7R8 I3L871 I3LH37 K7GN73 O62640 P26445 Q8SQ34	BIRC2 CD40 CD40LG LTA LTB LTBR MAP3K14 PIAP TNFB TNFRSF11A TNFRSF12A TNFRSF13C TNFRSF5 TNFSF1 TNFSF11 TNFSF12 TNFSF13B TRAF2 TRAF3	Sus scrofa (pig)
NTRK2 activates RAC1	Brain-derived neurotrophic factor Dedicator of cytokinesis 3 Ras-related C3 botulinum toxin substrate 1 Tyrosine-protein kinase Fyn	A0A287AKJ4 A0A8W4FI56 A1Y2K1 P14082	BDNF DOCK3 FYN RAC1	Sus scrofa (pig)
Electric Transmission Across Gap Junctions	Gap junction gamma-1 protein Gap junction protein Gap junction protein Pannexin Pannexin	A0A287AL56 A0A287B8K3 A4GVD1 F1RXR8 F1RY20	GJA10 GJA7 GJC1 GJD2 PANX PANX1 PANX2	Sus scrofa (pig)
Apoptotic cleavage of cell adhesion proteins	Cadherin-1 Catenin beta-1 Desmoglein 1 Desmoglein 2 Desmoglein 3 Desmoglein-1 Desmoplakin Occludin Plakophilin 1 Tight junction protein 1 Tight junction protein 2	A0A287AL69 A0A287AQX9 A0A287ATF2 A0A287BF71 F1RW75 F6QAP1 I3L5Z1 I3LA65 I3LGN8 I3LU54 Q3BDI7	CDH1 CTNNB1 DSG1 DSG2 DSG3 DSP OCLN PKP1 TJP1 TJP2	Sus scrofa (pig)
Elastic fibre formation	Elastin Fibrillin 2 Fibrillin 3 Fibulin-5 Lysyl oxidase homolog Lysyl oxidase homolog Lysyl oxidase homolog Microfibril associated protein 2 Microfibril associated protein 5 furin protein-lysine 6-oxidase protein-lysine 6-oxidase	A0A287AM88 A0A287AXU0 A0A5G2QM06 A0A5G2QNS3 A0A5G2R2Y0 F1RLC4 F1RMJ1 F1S8X0 F1SD87 F1SIC9 F1SNV7 I3LI73	ELN FBLN5 FBN2 FBN3 FURIN LOX LOXL1 LOXL2 LOXL3 LOXL4 MFAP2 MFAP5	Sus scrofa (pig)
Lewis blood group biosynthesis	Alpha-(1,3)-fucosyltransferase Alpha-(1,3)-fucosyltransferase Alpha2,3-sialyltransferase CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform 4 Fucosyltransferase Fucosyltransferase Fucosyltransferase Galactoside alpha-(1,2)-fucosyltransferase 2 Glycosyltransferase 2-like domain-containing protein Hexosyltransferase Hexosyltransferase Hexosyltransferase ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 Type 2 lactosamine alpha-2,3-sialyltransferase	A0A287AMU7 A0A287B633 A0A287B819 A0A287BIT3 A0A287BS10 A0A8W4FN42 F1RS05 F1RZT4 F1S6H2 F1SAB1 F1SBU3 I3L7N4 Q10982 Q70D54	B3GALT1 B3GALT2 B3GALT4 FUT10 FUT11 FUT2 FUT4 FUT7 LOC100513844 LOC110255214 ST3GAL-III ST3GAL3 ST3GAL4 ST3GAL6 ST6GALNAC6	Sus scrofa (pig)	G39211DH G81971FM G83633HB G90387AM G98173LG
TFAP2 (AP-2) family regulates transcription of growth factors and their receptors	ATPase family AAA domain containing 2 Estrogen receptor Glycoprotein hormones alpha chain Lutropin subunit beta	A0A287AQ37 P01219 P01232 Q29040	ATAD2 CGA ESR ESR1 LHB NR3A1	Sus scrofa (pig)
Calcitonin-like ligand receptors	Adrenomedullin 2 Calcitonin receptor-stimulating peptide 3 Calcitonin receptor Calcitonin Pro-adrenomedullin Receptor activity modifying protein 2 Receptor activity-modifying protein 1 Receptor activity-modifying protein 3	A0A287AQ81 A0A8W4FIA2 A6P7L6 F6PWN2 P25117 P53366 Q766Y6 Q867C0	ADM ADM2 AM CALCB CALCR CRSP3 RAMP1 RAMP2 RAMP3	Sus scrofa (pig)

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