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GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
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MIRAGE
G64973KT
Summary
- GlyTouCan ID
-
G64973KT
- IUPAC Condensed
- Gal(b1-3)[Gal(b1-4)GlcNAc(b1-6)]GalNAc(a1-
- Motifs
- N-acetyllactosamine O-Glycan core 2 Type 2 LN
- Subsumption Level
- Fully-defined saccharide
- Monoisotopic Mass
- 748.27
3D Structures
- GlycoNAVI
- G64973KT
- GlycoShape
- G64973KT
- GLYCAM
- DGalpb1-3[DGalpb1-4DGlcpNAcb1-6]DGalpNAca1-OH
Organisms
| Organisms | Evidence |
|---|---|
| Rattus norvegicus (Norway rat) | |
| Bos taurus (domestic cattle) |
Taxonomic Hierarchy
GlycoGene Database (GGDB)
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| ST3GAL4 | CMP-Neu5Ac |
G64973KT
|
O-glycan Synthesis |
G11457RF
|
O-glycan Synthesis | |
| FUT6 | GDP-Fuc |
G64973KT
|
O-glycan Synthesis |
G17752YB
|
O-glycan Synthesis | |
| B4GALT1 | UDP-Gal |
G00033MO
|
O-glycan Synthesis |
G64973KT
|
O-glycan Synthesis | |
| B4GALT4 | UDP-Gal |
G00033MO
|
pNP |
G64973KT
|
pNP | |
| A4GNT | UDP-GlcNAc |
G64973KT
|
[alpha]pNP |
G39890DX
|
[alpha]pNP |
KEGG BRITE Database
Core Protein
| UniProt ID | Protein Name | Reference | Source |
|---|---|---|---|
| O02197 | Circulating cathodic antigen | ||
| P01190 | Pro-opiomelanocortin | ||
| P01215 | Glycoprotein hormones alpha chain | ||
| P01876 | Immunoglobulin heavy constant alpha 1 | ||
| P02668 | Kappa-casein | ||
| P07498 | Kappa-casein | ||
| P08575 | Receptor-type tyrosine-protein phosphatase C | ||
| P0DN86 | Choriogonadotropin subunit beta 3 | ||
| P10761 | Zona pellucida sperm-binding protein 3 | ||
| P11279 | Lysosome-associated membrane glycoprotein 1 |
GlycomeAtlas
Tissues in which this glycan is expressed are highlighted in yellow.
- Danio rerio
Literature
- Tissue
-
- heart
- intestine
- testis
- Reference
- Yamakawa N et al. Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns. Nat Commun. 2018;9(1):4647. Published 2018 Nov 7. doi:10.1038/s41467-018-06950-3
- DOI
- 10.1038/s41467-018-06950-3
Localization sites organized by hierarchy by Uber-anatomy ontology (UBERON)
Sequence Descriptors
- GlycoCT
-
RES 1b:a-dgal-HEX-1:5 2s:n-acetyl 3b:b-dgal-HEX-1:5 4b:b-dglc-HEX-1:5 5s:n-acetyl 6b:b-dgal-HEX-1:5 LIN 1:1d(2+1)2n 2:1o(3+1)3d 3:1o(6+1)4d 4:4d(2+1)5n 5:4o(4+1)6d
- WURCS
- WURCS=2.0/3,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2/a3-b1_a6-c1_c4-d1
