Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Pyelonephritic adhesins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Kidney
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Adhesins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Type-II lung cells, Vascular endothelial cells
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Adhesins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Type-II lung cells, Vascular endothelial cells
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Adhesins
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Type-II lung cells, Vascular endothelial cells
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Adhesins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Erythrocytes
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
CBPs (choline-binding proteins)
|
nLc4Cer (Neolactotetraosylceramide; Paragloboside)
|
Oligoglycosylceramides
|
Cytokine-activated cells
|
Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Adhesins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Pharyngeal epithelial cells
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
P-fimbriae
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Acute cystitis patients
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
P-fimbriae
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Human erythrocytes
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Fimbriae
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Other than pharyngeal epithelial cells
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
Displaying entries 111 - 120 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
