PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
68-kDa proteins
|
N-Acetylneuraminic acid
|
Monosaccharides
|
Bronchial lavages of sheep with pneumonic pasteurelosis
|
NeuAc
|
Binding
|
||
PrsG (class III)
|
SSEA-4 (GSL) (Sialosyl galactosyl globoside; SGG; sialyl Gb5)
|
Monosialoglycosphingolipids
|
Human kidney tissues
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
PapG (class I)
|
SSEA-4 (GSL) (Sialosyl galactosyl globoside; SGG; sialyl Gb5)
|
Monosialoglycosphingolipids
|
Human kidney tissues
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
P-fimbriae
|
SSEA-4 (GSL) (Sialosyl galactosyl globoside; SGG; sialyl Gb5)
|
Monosialoglycosphingolipids
|
Human kidney tissues
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
PapG (class II)
|
SSEA-4 (GSL) (Sialosyl galactosyl globoside; SGG; sialyl Gb5)
|
Monosialoglycosphingolipids
|
Human kidney tissues
|
NeuAc(a2-3)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
Neutrophil-activating proteins (150-kDa)
|
Sialyl Lewis a (SLea) (GSL)
|
Monosialoglycosphingolipids
|
Human bile bladder tumor
|
NeuAc(a2-3)Gal(b1-3)[Fuc(a1-4)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
SSL5
|
Sialyl Lewis x (SLex) antigen
|
Oligosaccharides
|
(broad range)
|
NeuAc(a2-3)Gal(b1-4)
|
Binding
|
||
SSL11
|
Sialyl Lewis x (SLex) antigen
|
Oligosaccharides
|
(broad range)
|
NeuAc(a2-3)Gal(b1-4)
|
Binding
|
||
SabA (sialic acid-binding adhesin)
|
Sialyl Lewis x (SLex) antigen
|
Oligosaccharides
|
Gastric epithelial progenitors (GEPs)
|
NeuAc(a2-3)Gal(b1-4)
|
Binding
|
||
HpaA
|
Sialyl Lewis x (SLex) antigen
|
Oligosaccharides
|
Gastric epithelial progenitors (GEPs)
|
NeuAc(a2-3)Gal(b1-4)
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01