PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name ▲ | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
Sialyl-6-Paragloboside (S-6-PG; α2,6-sialylparagloboside)
|
Monosialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sialyl-6-Paragloboside (S-6-PG; α2,6-sialylparagloboside)
|
Monosialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
Unknown
|
Sialyl-6-Paragloboside (S-6-PG; α2,6-sialylparagloboside)
|
Monosialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Hemagglutinin (HA)
|
Sialyl-6-Paragloboside (S-6-PG; α2,6-sialylparagloboside)
|
Monosialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sialyl-6-Paragloboside (S-6-PG; α2,6-sialylparagloboside)
|
Monosialoglycosphingolipids
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
SabA (sialic acid-binding adhesin)
|
Sialyl-dimeric Lewis x (SdiLex) (GSL)
|
Monosialoglycosphingolipids
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sialyl-dimeric Lewis x (SdiLex-HSA)
|
Glycoproteins
|
Human serum albumin
|
NeuAc(a2-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)Glc(c)-APD
|
Binding
|
||
Capsid protein VP1
|
Sialylated oligosaccharides
|
Oligosaccharides
|
Cell surface
|
NeuAc(a2-3)Gal(b1-3)GalNAc
|
Binding
|
||
Unknown
|
Sialylated oligosaccharides
|
Oligosaccharides
|
Erythrocytes
|
NeuAc(a2-3)Gal(b1-3)GalNAc
|
Binding
|
||
Unknown
|
Sialylated oligosaccharides
|
Oligosaccharides
|
Erythrocytes
|
NeuAc(a2-3)Gal(b1-3)[NeuAc(a2-6)]GalNAc
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01