PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name ▲ | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Adhesins
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Human gastric mucosa
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
||
gp120
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Human U373-MG glioma and SK-N-MC neuroblastoma cells, Human colon epithelial HT29 cells
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
||
Neutrophil-activating proteins (150-kDa)
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Human meconium
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
||
Unknown
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
Intestinal tract
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
||
SfaA
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
|||
FHA (filamentous hemagglutinin)
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
|||
S-fimbriae
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
|||
Unknown
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01