GlyCosmos Portal

Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Database	Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB)	June 1, 2016

Species	Pathogen Adherence Molecule	Ligand Name	Ligand Feature	Glycan Sequence	Binding ▲	PubMed ID
Yersinia pestis	PsaA/B (pH-6 antigen)	Gb4 (Globoside; Globotetraose; P antigen)	Oligoglycosylceramides	GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	9712817
Yersinia pestis	PsaA/B (pH-6 antigen)	Gb5 (Forssman glycolipid)	Oligoglycosylceramides	GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	9712817
Escherichia coli	K88ab	Lc4Cer (Lactotetraosylceramide)	Oligoglycosylceramides	Gal(b1-3)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer	Not Binding	11953368
Helicobacter canis	Lectin-hemagglutinin adhesins	Gb4 (Globoside; Globotetraose; P antigen)	Oligoglycosylceramides	GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	12704182
Escherichia coli	F1C	Gb4 (Globoside; Globotetraose; P antigen)	Oligoglycosylceramides	GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	10816509
Escherichia coli	F1C	Gb5 (Forssman glycolipid)	Oligoglycosylceramides	GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	10816509
Cytomegalovirus	Unknown	Glucuronyl paragroboside (GPG)	Oligoglycosylceramides	GlcA(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer	Not Binding	9780061
Cytomegalovirus	Unknown	nLc4Cer (Neolactotetraosylceramide; Paragloboside)	Oligoglycosylceramides	Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer	Not Binding	9780061
Cytomegalovirus	Unknown	Gb4 (Globoside; Globotetraose; P antigen)	Oligoglycosylceramides	GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	9780061
Escherichia coli	Unknown	Fucosyl Asialo GM1	Oligoglycosylceramides	Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer	Not Binding	3413084