Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID ▲ |
|---|---|---|---|---|---|---|---|
|
Unknown
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Gal(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
Glucosylceramide
|
Monoglycosylceramides
|
Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Gal(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
Glucosylceramide
|
Monoglycosylceramides
|
Glc(b1-1)Cer
|
Not Binding
|
|||
|
Shiga toxin
|
isoGb3 (Isoglobotriaosylceramide; iGb3)
|
Oligoglycosylceramides
|
Gal(a1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Shiga toxin
|
unnamed ligand
|
Oligoglycosylceramides
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Shiga toxin
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Shiga toxin
|
Gal-Gb3
|
Oligoglycosylceramides
|
Gal(a1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Shiga toxin
|
unnamed ligand
|
Oligoglycosylceramides
|
GalNAc(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Shiga toxin
|
Gal-nLc4Cer; P1 antigen (GSL)
|
Oligoglycosylceramides
|
Gal(a1-4)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
Displaying entries 171 - 180 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
