Pathogen Adherence to Carbohydrate Database (PACDB)

PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.

Database Last Updated
Pathogen Adherence to Carbohydrate Database (PACDB) June 1, 2016
Species Pathogen Adherence Molecule Ligand Name Ligand Feature Target Source Glycan Sequence Binding PubMed ID ▲
PrsG (class III) G adhesins
Gb5 (Forssman glycolipid)
Oligoglycosylceramides
Acute cystitis patients
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
Binding
0
P-fimbriae
Gb5 (Forssman glycolipid)
Oligoglycosylceramides
Acute cystitis patients
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
Binding
0
PapG (class II) G adhesins
Gal alpha 1-4 Gal-containing isoreceptors
Glycosphingolipids
Patient with septic infection or pyelonephritis
Gal(a1-4)Gal
Binding
0
P-fimbriae
Gal alpha 1-4 Gal-containing isoreceptors
Glycosphingolipids
Patient with septic infection or pyelonephritis
Gal(a1-4)Gal
Binding
0
P-fimbriae
Gal alpha 1-4 Gal-containing isoreceptors
Glycosphingolipids
Pyelonephritis patients
Gal(a1-4)Gal
Binding
0
PapG (class I) G adhesins
Gal alpha 1-4 Gal-containing isoreceptors
Glycosphingolipids
Pyelonephritis patients
Gal(a1-4)Gal
Binding
0
Unknown
unnamed ligand
Oligosaccharides
Chinchilla tubotympanum
Gal(b1-4)GlcNAc(b1-3)Gal(b
Binding
Unknown
MHVR (murine member of the carcinoembryonic antigen family of glycoproteins)
Glycoproteins
BHK-21 cells
Binding
Unknown
ICAM-1 (intercellular adhesion molecule-1) domain1/2
Glycoproteins
Primary chicken embryo fibroblasts (CEFs)
Binding
Unknown
Galactosylceramide (or derivative)
Monoglycosylceramides
Human colon epithelial HT29 cells
Gal(b1-1)Cer
Binding
Displaying entries 1 - 10 of 1840 in total

International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01