Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID ▲ |
|---|---|---|---|---|---|---|---|
|
Unknown
|
unnamed ligand
|
Oligosaccharides
|
Chinchilla tubotympanum
|
Gal(b1-4)GlcNAc(b1-3)Gal(b
|
Binding
|
||
|
Unknown
|
MHVR (murine member of the carcinoembryonic antigen family of glycoproteins)
|
Glycoproteins
|
BHK-21 cells
|
Binding
|
|||
|
Unknown
|
ICAM-1 (intercellular adhesion molecule-1) domain1/2
|
Glycoproteins
|
Primary chicken embryo fibroblasts (CEFs)
|
Binding
|
|||
|
Unknown
|
Galactosylceramide (or derivative)
|
Monoglycosylceramides
|
Human colon epithelial HT29 cells
|
Gal(b1-1)Cer
|
Binding
|
||
|
Protein F (Antigen I/II)
|
Fibronectin
|
Glycoproteins
|
Respiratory epithelial cells
|
Binding
|
|||
|
Exoenzyme S
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Exoenzyme S
|
Lactosylceramide (Lactocerebroside)
|
Diosylceramides
|
Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Exoenzyme S
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Pertussis toxin
|
Fetuin
|
Glycoproteins
|
Binding
|
||||
|
PT (subunit S2 of B oligomer)
|
Fetuin
|
Glycoproteins
|
Binding
|
Displaying entries 1 - 10 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
