Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
HMW2
|
Oligosaccharides rich in sialic acid
|
Oligosaccharides
|
Human epithelial cells
|
Binding
|
|||
|
B subunit
|
unnamed ligand
|
Glycosphingolipids
|
Human meconium
|
Fuc(a1-2)Gal(b1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
Natural ligand of integrin [alpha]v[beta]3
|
De-N-sulfated heparin
|
Glycosaminoglycans
|
Extracellular matrix (ECM)
|
Not Binding
|
|||
|
Unknown
|
GD2
|
Disialoglycosphingolipids
|
GalNAc(b1-4)[NeuAc(a2-8)NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
GT1b analog
|
Trisialoglycosphingolipids
|
Synapse
|
Binding
|
|||
|
PA-IL
|
Melibiose
|
Disaccharides
|
Gal(a1-6)Glc
|
Binding
|
|||
|
Unknown
|
Sulfatide (CSE)
|
Sulfoglycosphingolipids
|
HSO3(-3)Gal(b1-1)Cer
|
Binding
|
|||
|
Membrane-associated lectins (heavy(170-kDa)/light(35-or31-kDa) subunits)
|
N-Acetylgalactosamine
|
Monosaccharides
|
GalNAc
|
Binding
|
|||
|
Unknown
|
B-GM1
|
Monosialoglycosphingolipids
|
Gal(a1-3)[Fuc(a1-2)]Gal(b1-3)GalNAc(b1-4)[NeuAc(a2-3)]Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Adhesins
|
Gb4 (Globoside; Globotetraose; P antigen)
|
Oligoglycosylceramides
|
Erythrocytes
|
GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
Displaying entries 1791 - 1800 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
