Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
Unknown
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Unknown
|
Blood group A antigen
|
Oligosaccharides
|
Human saliva
|
GalNAc(a1-3)[Fuc(a1-2)]Gal(b1-3)GlcNAc
|
Binding
|
||
|
BabA (blood group antigen binding adhesin)
|
Blood group Lewis b (Leb) antigen
|
Oligosaccharides
|
Binding
|
||||
|
Heat-labile enterotoxin
|
Asialo GM1 (Gangliotetraosylceramide; Gg4; GA1)
|
Oligoglycosylceramides
|
Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
PapG
|
Gal alpha 1-4 Gal-containing glicolipids
|
Glycolipids
|
Gal(a1-4)Gal
|
Binding
|
|||
|
FimH
|
Fibronectin
|
Glycoproteins
|
Binding
|
||||
|
Unknown
|
Neuraminic acid-containing sialoglycoproteins
|
Glycoproteins
|
Binding
|
||||
|
Unknown
|
GM3(Neu4Ac5Gc)
|
Monosialoglycosphingolipids
|
Ac(-4)Neu5Gc(a2-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
|
Lectin-like proteins (adhesin)
|
Lactotriaosylceramide (Lc3)
|
Oligoglycosylceramides
|
GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
|||
|
Unknown
|
Blood group O antigen
|
Oligosaccharides
|
Human saliva
|
Binding
|
Displaying entries 1 - 10 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
