PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name ▲ | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Unknown
|
α-Gal on Fab of IgA(κ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
||
Toxin A
|
α-Gal on Fab of IgM(λ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
||
Unknown
|
α-Gal on Fab of IgM(λ) MAb
|
Glycoproteins
|
Mouse
|
Gal
|
Binding
|
||
Unknown
|
α-GalCer/CD1d tetramers
|
Glycoconjugates
|
V[alpha]14+ NK1.1- T cells in infected liver of mice
|
Binding
|
|||
S-fimbriae
|
α-Sialyl-2,3-lactose-containing receptors
|
Saccharides
|
Binding
|
||||
B subunit
|
α-hydroxylated Gb3
|
Oligoglycosylceramides
|
Binding
|
||||
Viral protein
|
α-mannose and α-glucose side chains of ConA-binding glycoproteins
|
Glycoproteins
|
Feline kidney(CRFK)/Equine fetal kidney(EFK)/Mouse(McCoy)/Rabbit kidney(RK-13)
|
Man/Glc
|
Binding
|
||
SafS
|
α-sialyl-2-3-β-galactose
|
Disaccharides
|
Binding
|
||||
VP1 protein (RGD motif)
|
αvβ3 Integrin
|
Glycoproteins
|
BHK-21/LLC-MK2/HeLa/BK-LF
|
Binding
|
|||
VP1 (RGD peptide)
|
αvβ3 Integrin (independent of expression of Heparan sulfate on cell-sulface)
|
Glycoproteins
|
Extracellular matrix (ECM)
|
Binding
|
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Partly supported by NIH Common Fund Grant #1U01GM125267-01