PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID ▲ |
---|---|---|---|---|---|---|---|
MuV-HN
|
Glycans containing α2,3-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-2)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-2)[NeuAc(a2-3)Gal(b1-4)GlcNAc(b1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc
|
Not Binding
|
|||
MuV-HN
|
Glycans containing α2,6-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-6)Gal(b1-4)GlcNAc
|
Not Binding
|
|||
MuV-HN
|
Glycans containing α2,3-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-3)Gal(b1-4)GlcNAc
|
Binding
|
|||
MuV-HN
|
Glycans containing α2,6-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-2)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-4)]Man(a1-3)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-2)Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc
|
Not Binding
|
|||
PrsG (class III) G adhesins
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Acute cystitis patients
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
P-fimbriae
|
Gb5 (Forssman glycolipid)
|
Oligoglycosylceramides
|
Acute cystitis patients
|
GalNAc(a1-3)GalNAc(b1-3)Gal(a1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
PapG (class II) G adhesins
|
Gal alpha 1-4 Gal-containing isoreceptors
|
Glycosphingolipids
|
Patient with septic infection or pyelonephritis
|
Gal(a1-4)Gal
|
Binding
|
||
P-fimbriae
|
Gal alpha 1-4 Gal-containing isoreceptors
|
Glycosphingolipids
|
Patient with septic infection or pyelonephritis
|
Gal(a1-4)Gal
|
Binding
|
||
P-fimbriae
|
Gal alpha 1-4 Gal-containing isoreceptors
|
Glycosphingolipids
|
Pyelonephritis patients
|
Gal(a1-4)Gal
|
Binding
|
||
PapG (class I) G adhesins
|
Gal alpha 1-4 Gal-containing isoreceptors
|
Glycosphingolipids
|
Pyelonephritis patients
|
Gal(a1-4)Gal
|
Binding
|
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01