PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Database | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name ▲ | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
K88ab/K88ac/K88ad
|
Fuc-nLc6 (V3)
|
Oligoglycosylceramides
|
Gal(b1-4)[Fuc(a1-3)]GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
K88ab/K88ac/K88ad
|
Fuc-nLc6 (VI2)
|
Oligoglycosylceramides
|
Fuc(a1-2)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)GlcNAc(b1-3)Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
|||
Unknown
|
Fucose
|
Monosaccharides
|
Respiratory tract
|
Fuc
|
Binding
|
||
RS-IIL (homologous to PA-IIL)
|
Fucose
|
Monosaccharides
|
Fuc
|
Binding
|
|||
Unknown
|
Fucose
|
Monosaccharides
|
Fuc
|
Binding
|
|||
Unknown
|
Fucose
|
Monosaccharides
|
Fuc
|
Binding
|
|||
Botulinum neurotoxin (16S)
|
Fucose
|
Monosaccharides
|
Intestinal epithelial cells (T84)
|
Fuc
|
Not Binding
|
||
HA
|
Fucose
|
Monosaccharides
|
Intestinal epithelial cells (T84)
|
Fuc
|
Not Binding
|
||
N-methylphenyl-alanine pili
|
Fucose ve mannose carbohydrate
|
Saccharides
|
Binding
|
||||
35S-labeled or 125I-labeled proteins
|
Fucosyl Asialo GM1
|
Oligoglycosylceramides
|
Mouse small intestine
|
Fuc(a1-2)Gal(b1-3)GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01