Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
|
VP8 (spike protein)
|
Sialic acid
|
Monosaccharides
|
Binding
|
||||
|
Unknown
|
unnamed ligand
|
Disaccharides
|
GalNAc(b1-3)Gal
|
Binding
|
|||
|
HIV surface glycoprotein gp120
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Neural cell lines
|
Gal(b1-1)Cer
|
Binding
|
||
|
MuV-HN
|
Glycans containing α2,6-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-6)Gal(b1-4)GlcNAc
|
Not Binding
|
|||
|
MuV-HN
|
Glycans containing α2,3-linked sialic acid
|
Oligosaccharides
|
NeuAc(a2-3)Gal(b1-4)GlcNAc
|
Binding
|
|||
|
Adhesins
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
Type-II lung cells, Vascular endothelial cells
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
||
|
Unknown
|
unnamed ligand
|
Sialoglycosphingolipids
|
Bovine buttermilk
|
Gal(b1-4)GlcNAc(b1-6)[NeuAc(a2-6)Gal(b1-4)GlcNAc(b1-3)]Gal(b1-4)Glc(b1-1)Cer
|
Not Binding
|
||
|
PO
|
unnamed ligand
|
Oligosaccharides
|
human erythrocytes
|
Gal(a1-4)Gal
|
Binding
|
||
|
A27L proteins
|
Heparan sulfate
|
Glycosaminoglycans
|
Mammalian cell surface
|
Binding
|
|||
|
Unknown
|
Asialo-GM2 (Gangliotriosylceramide; GgO3)
|
Oligoglycosylceramides
|
GalNAc(b1-4)Gal(b1-4)Glc(b1-1)Cer
|
Binding
|
Displaying entries 41 - 50 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
