Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Database | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding ▲ | PubMed ID |
|---|---|---|---|---|---|---|---|
|
F1C
|
Galactosylceramide (t18:0-h22:0-h24:0)
|
Monoglycosylceramides
|
Human kidney
|
Gal(b1-1)Cer
|
Binding
|
||
|
gp120
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Human U373-MG glioma and SK-N-MC neuroblastoma cells, Human colon epithelial HT29 cells
|
Gal(b1-1)Cer
|
Binding
|
||
|
Envelope glycoprotein gp120
|
Galactosylceramide (Galactocerebroside)
|
Monoglycosylceramides
|
Neural receptor
|
Gal(b1-1)Cer
|
Binding
|
||
|
SBA (soybean agglutinin)
|
N-Acetylgalactosamine
|
Monosaccharides
|
Vero E6/P388D1 cells
|
GalNAc
|
Binding
|
||
|
Type-2 fimbrial lectins (130-kDa glycoprotein)
|
N-Acetylgalactosamine
|
Monosaccharides
|
Polymorphonuclear leukocytes (PMNs)
|
GalNAc
|
Binding
|
||
|
Type-2 fimbrial lectins (130-kDa glycoprotein)
|
Galactose
|
Monosaccharides
|
Polymorphonuclear leukocytes (PMNs)
|
Gal
|
Binding
|
||
|
Transmembrane heavy subunit (Hgl; 170-kDa) disulfide linked to a GPI-anchored light subunit (Lgl; 31-to 35-kDa).
|
N-Acetylgalactosamine
|
Monosaccharides
|
Intestinal cells
|
GalNAc
|
Binding
|
||
|
Transmembrane heavy subunit (Hgl; 170-kDa) disulfide linked to a GPI-anchored light subunit (Lgl; 31-to 35-kDa).
|
Galactose
|
Monosaccharides
|
Intestinal cells
|
Gal
|
Binding
|
||
|
Gal/GalNAc Lectins (260-kDa)
|
N-Acetylgalactosamine
|
Monosaccharides
|
c-Met on hepatocytes
|
GalNAc
|
Binding
|
||
|
Gal/GalNAc Lectins (260-kDa)
|
Galactose
|
Monosaccharides
|
c-Met on hepatocytes
|
Gal
|
Binding
|
Displaying entries 71 - 80 of 1840 in total
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International Collaboration
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Acknowledgements
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
