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Glycomics MS Repository for glycan annotations from GlycoWorkbench
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Repository for lectin-assisted multimodality data
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Pathogen Adherence to Carbohydrate Database (PACDB)
PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
| Source | Last Updated |
|---|---|
| Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
| Species | Pathogen Adherence Molecule | Ligand Name ▲ | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
|---|---|---|---|---|---|---|---|
| Helicobacter pylori | Lectin-hemagglutinin adhesins | Blood group Lewis b (Leb) antigen | Oligosaccharides | Binding | 12704182 | ||
| Lactobacillus johnsonii | Unknown | Blood group Lewis b (Leb) antigen | Oligosaccharides | Binding | 11087711 | ||
| Helicobacter mustelae | Lectin-hemagglutinin adhesins | Blood group Lewis b (Leb) antigen | Oligosaccharides | Not Binding | 12704182 | ||
| Helicobacter bilis | Lectin-hemagglutinin adhesins | Blood group Lewis b (Leb) antigen | Oligosaccharides | Not Binding | 12704182 | ||
| Helicobacter pylori | Lectin-hemagglutinin adhesins | Blood group Lewis b (Leb) antigen | Oligosaccharides | Not Binding | 12704182 | ||
| Helicobacter hepaticus | Lectin-hemagglutinin adhesins | Blood group Lewis b (Leb) antigen | Oligosaccharides | Not Binding | 12704182 | ||
| Helicobacter felis | Lectin-hemagglutinin adhesins | Blood group Lewis b (Leb) antigen | Oligosaccharides | Not Binding | 12704182 | ||
| Helicobacter canis | Lectin-hemagglutinin adhesins | Blood group Lewis b (Leb) antigen | Oligosaccharides | Not Binding | 12704182 | ||
| Norovirus | Unknown | Blood group O antigen | Oligosaccharides | Human saliva | Binding | 16707048 | |
| Helicobacter pylori | Unknown | Blood group antigens | Oligosaccharides | Binding | 16088272 | ||
| Influenza virus | Unknown | Bovine submaxillary mucin (BSM) | Glycoproteins | Binding | 1740131 | ||
| Streptococcus pneumoniae | PspC (Lary family) (alias: SpsA/CbpA/PbcA/Hic) | C3 and complement factor H | Glycoproteins | Binding | 12640357 | ||
| Neisseria meningitidis | PorA | C4b-binding protein (C4bp) | Glycoproteins | Serum | Binding | 15879129 | |
| Poliovirus | Unknown | CD155 | Glycoproteins | Binding | 12663789 | ||
| Escherichia coli | FimH | CD48 | Glycoproteins | Binding | 12010488 | ||
| Escherichia coli | Type 1-pili | CD48 | Glycoproteins | Binding | 12010488 | ||
| Escherichia coli | Verotoxin (1; B-subunit) | CD77 (Globotriaosylceramide; Gb3) | Oligoglycosylceramides | Germinal center B lymphocytes, Burkitt's lymphoma cells | Gal(a1-4)Gal | Binding | 7516406 |
| Escherichia coli | Unknown | CD77 (Globotriaosylceramide; Gb3) | Oligoglycosylceramides | Germinal center B lymphocytes, Burkitt's lymphoma cells | Gal(a1-4)Gal | Binding | 7516406 |
| Escherichia coli | F1C | Ceramide | Non-glycosylated Lipids | Cer | Not Binding | 10816509 | |
| Borrelia burgdorferi | Unknown | Chondroitin 4-sulfate (C-4S) | Glycosaminoglycans | Vero cells | Not Binding | 9826395 | |
| Borrelia burgdorferi | Unknown | Chondroitin 6-sulfate (C-6S) | Glycosaminoglycans | Vero cells | Not Binding | 9826395 | |
| Foot-and-mouth disease virus | Natural ligand of integrin [alpha]v[beta]3 | Chondroitin sulfate A | Glycosaminoglycans | Extracellular matrix (ECM) | Not Binding | 8764038 | |
| Foot-and-mouth disease virus | Natural ligand of integrin [alpha]v[beta]3 | Chondroitin sulfate C | Glycosaminoglycans | Extracellular matrix (ECM) | Not Binding | 8764038 | |
| Human immunodeficiency virus | Unknown | Cluster of differentiation 4 (CD4) | Glycoproteins | Binding | 15973004 | ||
| Escherichia coli | FimH | Collagen | Glycoproteins | Binding | 12010488 |
