PACDB provides the information on pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carbohydrates expressed on the cell surface of host animals or plants.
Source | Last Updated |
---|---|
Pathogen Adherence to Carbohydrate Database (PACDB) | June 1, 2016 |
Species | Pathogen Adherence Molecule | Ligand Name | Ligand Feature | Target Source | Glycan Sequence | Binding | PubMed ID |
---|---|---|---|---|---|---|---|
Staphylococcus epidermidis | 17-kDa HBP (Heparin-binding protein) | Thrombospondin (TSP) | Glycoproteins | Binding | 11393292 | ||
Borrelia burgdorferi | "DbpA, DbpB, Bgp" | Collagen (type I) | Glycoproteins | Binding | 16299269 | ||
Mycoplasma gallisepticum | Hlp3 (HMW3-like protein) | Fibronectin | Glycoproteins | Binding | 16495551 | ||
Bordetella pertussis | Pertactin | Integrins | Glycoproteins | Binding | 10341176 | ||
Bordetella pertussis | Pertactin | Integrins | Glycoproteins | Binding | 12640357 | ||
Herpes virus | gp70 | GAGs (glycosaminoglycans) | Glycosaminoglycans | Binding | 18301747 | ||
Borrelia burgdorferi | "DbpA, DbpB, Bgp" | Heparin | Glycosaminoglycans | Binding | 16299269 | ||
Helicobacter pylori | Unknown | Mono-N-propionylated S-3-PG (paragloboside) | Glycosphingolipids | Binding | 15659615 | ||
Helicobacter pylori | Unknown | Mono-de-N-acetylated S-3-PG (paragloboside) | Glycosphingolipids | Binding | 15659615 | ||
Semliki forest virus | Unknown | Sphingomyelin | Non-glycosylated Lipids | Binding | 8574698 | ||
New world arenavirus | Glycoprotein (GP) | O-mannosyl glycans on alpha-dystroglycan (DG) | O-glycans | Binding | 17360738 | ||
Plasmodium falciparum | Unknown | N-linked oligosaccharides of glycophorins | Oligosaccharides | Binding | 8574698 | ||
Plasmodium falciparum | Unknown | Polylactosamine of band 3 | Polysaccharides | Binding | 8574698 | ||
Borrelia burgdorferi | "DbpA, DbpB, Bgp" | Decorin | Proteoglycans | Binding | 16299269 | ||
Anaplasma marginale | "MSP1a, MSP1b, MSP2" | unknown carbohydrate ligand | Saccharides | Binding | 16299269 |
GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.
Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
GlyCosmos Portal v4.1.0
Last updated: December 9, 2024