GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 201 - 225 of 557 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism ▲ GlyTouCan ID
MyD88:MAL(TIRAP) cascade initiated on plasma membrane
  • ECSIT
  • MAP3K1
  • TIRAP
  • TRAF6
Bos taurus (cattle)
Scavenging by Class H Receptors
  • APOB
  • SPARC
  • STAB1
  • STAB2
Bos taurus (cattle)
Regulation of actin dynamics for phagocytic cup formation
  • ABI1
  • ABI2
  • ABL1
  • ACTB
  • ACTG
  • ACTG1
  • ACTR2
  • ACTR3
  • ARP2
  • ARP3
  • ARPC1A
  • ARPC1B
  • ARPC2
  • ARPC3
  • ARPC4
  • ARPC5
  • BAIAP2
  • BRK1
  • BTK
  • C22H3ORF10
  • CD247
  • CD3G
  • CDC42
  • CRK
  • CYFIP1
  • CYFIP2
  • DOCK1
  • ELMO2
  • ERK2
  • FCGR1A
  • FCGR2B
  • FCGR3
  • FCGR3A
  • FCGRIII
  • GRB2
  • HSP90A
  • HSP90AA1
  • HSP90AB1
  • HSPC3
  • HSPCA
  • HSPCB
  • LIMK1
  • MAPK1
  • MAPK3
  • MYH2
  • MYH9
  • MYO10
  • MYO1C
  • MYO5A
  • MYO9B
  • NCK1
  • NCKAP1L
  • NCKIPSD
  • NF2
  • PAK1
  • PRKM1
  • PTK2
  • SYK
  • VAV1
  • VAV2
  • VAV3
  • WASF1
  • WASF2
  • WASF3
  • WASL
Bos taurus (cattle)
Assembly of collagen fibrils and other multimeric structures
  • COL10A1
  • COL11A1
  • COL11A2
  • COL1A1
  • COL1A2
  • COL27A1
  • COL2A1
  • COL3A1
  • COL4A1
  • COL5A1
  • COL5A3
  • COL6A1
  • COL6A2
  • COL6A3
  • COL6A5
  • COL6A6
  • COL8A1
  • COL8A2
Bos taurus (cattle)
Cyclin A:Cdk2-associated events at S phase entry
  • CABLES1
  • CCNA1
  • CCNA2
  • CCNH
  • CDC25A
  • CDC25B
  • CDK2
  • CDK7
  • CDKN1A
  • CDKN1B
  • CDKN2
  • FZR1
  • MNAT1
  • RB1
  • WEE1
Bos taurus (cattle)
Interleukin receptor SHC signaling
  • CSF2
  • CSF2RB
  • GAB2
  • GRB2
  • IL-2
  • IL2
  • IL2RA
  • IL2RG
  • IL3
  • IL3RA
  • IL5
  • IL5RA
  • INPP5D
  • INPPL1
  • JAK1
  • JAK2
  • JAK3
  • PIK3CA
  • PIK3CB
  • PIK3CD
  • PIK3R1
  • PIK3R2
  • PIK3R3
  • PTPN6
  • SHC1
  • SOS1
Bos taurus (cattle)
Ficolins bind to repetitive carbohydrate structures on the target cell surface
  • FCN2
  • MASP1
  • MASP2
Bos taurus (cattle)
Transcriptional regulation by RUNX2
  • CBFB
  • CCNB1
  • CCND1
  • CDC2
  • CDK1
  • CDK4
  • CDKN1
  • PPM1D
  • RUNX2
  • SOX9
Bos taurus (cattle)
Signaling by Insulin receptor
  • INS
  • INSR
Bos taurus (cattle)
Basigin interactions
  • ATP1B1
  • ATP1B2
  • ATP1B3
  • BSG
  • CAV1
  • ITGA3
  • ITGA6
  • ITGB1
  • LOC112441463
  • MAG
  • PPIA
  • PPIL2
  • SLC16A1
  • SLC16A3
  • SLC16A8
  • SLC3A2
  • SLC7A10
  • SLC7A11
  • SLC7A5
  • SLC7A6
  • SLC7A7
  • SLC7A8
  • SLC7A9
  • SPN
Bos taurus (cattle)
Synthesis of Ketone Bodies
  • AACS
  • ACAT1
  • ACSS3
  • BDH
  • BDH1
  • BDH2
  • HMGCL
  • HMGCLL1
  • HMGCS2
Bos taurus (cattle)
Abacavir transmembrane transport
  • OCT1
  • SLC22A1
  • SLC22A2
  • SLC22A3
Bos taurus (cattle)
VEGFR2 mediated cell proliferation
  • KDR
  • KRAS
  • NRAS
  • PDPK1
  • PLCG1
  • PRKCB
  • PRKCB1
  • PRKCD
  • PRKCZ
  • RASA1
  • SPHK1
  • SRC
  • VEGF
  • VEGFA
Bos taurus (cattle)
Initial triggering of complement
  • ADIB
  • C1QA
  • C1QB
  • C1QC
  • C1R
  • C1S
  • C2
  • C4A
  • COLEC10
  • COLEC11
  • FCN2
  • LOC107131209
  • MASP1
  • MASP2
  • MBL
Bos taurus (cattle)
Glycoprotein hormones
  • CGA
  • FSHB
  • INHA
  • INHBA
  • INHBB
  • INHBC
  • INHBE
  • LHB
  • TSHB
Bos taurus (cattle)
Striated Muscle Contraction
  • ACTN2
  • ACTN3
  • DES
  • DMD
  • MYBPC1
  • MYBPC3
  • MYH3
  • MYH6
  • MYH8
  • MYL1
  • MYL2
  • MYL4
  • NEB
  • TCAP
  • TMOD1
  • TMOD2
  • TMOD3
  • TMOD4
  • TNNC
  • TNNC1
  • TNNC2
  • TNNI1
  • TNNI2
  • TNNT1
  • TNNT2
  • TNNT3
  • TPM1
  • TPM2
  • TPM3
  • VIM
Bos taurus (cattle)
Class A/1 (Rhodopsin-like receptors)
  • CMLKR1
  • CNR1
  • CNR2
  • GPBAR1
  • GPR132
  • GPR18
  • GPR183
  • GPR35
  • GPR39
  • GPR4
  • GPR65
  • GPR68
  • MTNR1A
  • MTNR1B
  • OXGR1
  • PAFR
  • PTAFR
  • SUCNR1
  • TGR5
Bos taurus (cattle)
The NLRP3 inflammasome
  • HSP90AB1
  • HSPC3
  • HSPCB
  • NLRP3
  • P2RX7
  • PANX
  • PANX1
  • PSTPIP1
  • PYCARD
  • SUGT1
  • TXN
  • TXNIP
Bos taurus (cattle)
RHOBTB1 GTPase cycle
  • BRE1A
  • CCT2
  • CCT7
  • COPS2
  • COPS4
  • CPSF7
  • CUL3
  • GPS1
  • HNRPC
  • LOC782101
  • MYO6
  • PDE5
  • PDE5A
  • RBBP6
  • RBMX
  • RHOBTB1
  • RNF20
  • ROCK1
  • ROCK2
  • SFRS10
  • SRRM1
  • STK38
  • TRA2B
  • TXNL1
  • VIM
Bos taurus (cattle)
Progressive trimming of alpha-1,2-linked mannose residues from Man9/8/7GlcNAc2 to produce Man5GlcNAc2
  • MAN1A1
  • MAN1A2
  • MAN1C1
Bos taurus (cattle)
Eicosanoid ligand-binding receptors
  • OXER1
Bos taurus (cattle)
MAPK3 (ERK1) activation
  • CDC2
  • CDK1
  • CDKN1
  • IL6
  • IL6R
  • IL6ST
  • JAK1
  • JAK2
  • MAP2K1
  • MAPK3
  • PTPN11
  • TYK2
Bos taurus (cattle)
Cholesterol biosynthesis
  • ACAT2
  • ARV1
  • CYP51A1
  • DHCR24
  • FDFT1
  • GGPS1
  • HMGCR
  • HMGCS1
  • HSD17B7
  • IDI1
  • LBR
  • LSS
  • MSMO1
  • MVD
  • MVK
  • NSDHL
  • PLPP6
  • PMVK
  • SC4MOL
  • SQLE
  • SREBF1
  • SREBF2
  • TM7SF2
  • fdft1
Bos taurus (cattle)
Interleukin-4 and Interleukin-13 signaling
  • GRP94
  • HSP90B1
  • HSPC4
  • IL13
  • IL13RA1
  • IL13RA2
  • IL2RG
  • IL4
  • IL4R
  • JAK1
  • JAK2
  • JAK3
  • SOCS1
  • SOCS5
  • STAT1
  • STAT3
  • STAT6
  • TRA1
  • TYK2
Bos taurus (cattle)
Voltage gated Potassium channels
  • EAG
  • KCNA10
  • KCNA2
  • KCNA3
  • KCNA4
  • KCNA5
  • KCNA6
  • KCNA7
  • KCNAB1
  • KCNAB2
  • KCNAB3
  • KCNB1
  • KCNB2
  • KCNC1
  • KCNC3
  • KCNC4
  • KCND1
  • KCND2
  • KCND3
  • KCNF1
  • KCNG1
  • KCNG2
  • KCNG3
  • KCNG4
  • KCNH1
  • KCNH2
  • KCNH3
  • KCNH4
  • KCNH5
  • KCNH6
  • KCNH7
  • KCNH8
  • KCNQ1
  • KCNQ2
  • KCNQ3
  • KCNQ4
  • KCNQ5
  • KCNS1
  • KCNS2
  • KCNV2
  • KVB2
Bos taurus (cattle)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024