GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	November 12, 2024
ECODAB	April 1, 2019

Displaying entries **76 - 100** of **270** in total

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Pathway Name	Protein Name	UniProt ID	Gene Symbol	Organism	GlyTouCan ID
Collagen chain trimerization	Collagen alpha-1(XVII) chain Collagen type I alpha 1 chain Collagen type I alpha 2 chain Collagen type III alpha 1 chain Collagen type XII alpha 1 chain	A0A1D5PE57 A0A1D5PYU1 A0A1L1RPW4 A0A5H1ZRJ7 Q90584	BP180 BPAG2 COL12A1 COL17A1 COL1A1 COL1A2 COL3A1	Gallus gallus (chicken)
TLR5 cascade	Flagellin Phase 2 flagellin Toll-like receptor 5	P06179 P52616 Q5GR02	H2 TLR5 flaF fliC fljB hag	Gallus gallus (chicken)
Chromatin modifying enzymes	Histone H3.2 Protein-arginine deiminase protein-arginine deiminase	E1C0W6 P84229 S6BNL5	H3-I H3-II H3-III H3-IV H3-V H3-VI H3-VII H3-VIII PADI1 PADI2 cPAD1 cPAD2	Gallus gallus (chicken)
VLDLR internalisation and degradation	AP-2 complex subunit alpha AP-2 complex subunit mu Clathrin light chain Nuclear receptor subfamily 1 group H member 3 Polyubiquitin-B RING-type E3 ubiquitin transferase Ubiquitin B Ubiquitin-ribosomal protein eS31 fusion protein Very low-density lipoprotein receptor	A0A1D5NV94 A0A1D5P546 A0A3Q2U5N2 A0A3Q2UH91 P0CG62 P79781 P98165 Q5F429 Q5ZMP6	AP2A2 AP2M1 CLTA NR1H3 RCJMB04_3l2 RPS27A UBA80 UBB VLDLR VTGR	Gallus gallus (chicken)
Signaling by Activin	Activin receptor type-2A Inhibin beta B chain Mothers against decapentaplegic homolog 3 Mothers against decapentaplegic homolog Mothers against decapentaplegic homolog Transforming growth factor beta receptor 3 receptor protein serine/threonine kinase	A0A1D5NUH3 A0A3Q2TUT8 P84023 Q8UWF3 Q90669 Q90998 R4GIS0	ACVR1C ACVR2A INHBB LOC769000 MADH2 MADH3 SMAD3 TGFBR3	Gallus gallus (chicken)
The canonical retinoid cycle in rods (twilight vision)	Dehydrogenase/reductase 9 Lecithin retinol acyltransferase Retinaldehyde-binding protein 1 Retinol dehydrogenase 11 Retinol-binding protein 4 Rhodopsin Transthyretin	A0A1I7Q422 E1BTL3 E1C1U1 E1C781 F1P3Y2 F1P4T5 P41263	CRALBP LOC121106449 LRAT RBP4 RDH11 RHO RLBP1 TTR	Gallus gallus (chicken)
Ion transport by P-type ATPases	Calcium-transporting ATPase Calcium-transporting ATPase Cardiac phospholamban FXYD domain-containing ion transport regulator PDZ domain-containing protein 11 Phospholipid-transporting ATPase Phospholipid-transporting ATPase Phospholipid-transporting ATPase Phospholipid-transporting ATPase Phospholipid-transporting ATPase Plasma membrane calcium-transporting ATPase 1 Sodium/potassium-transporting ATPase subunit alpha Sodium/potassium-transporting ATPase subunit beta-3 Sodium/potassium-transporting ATPase subunit beta calcium/calmodulin-dependent protein kinase	A0A1D5P8E2 A0A1L1RKB7 A0A3Q2U0I3 A0A3Q2U2N5 E1BX05 F1NGS8 F1NUR8 F1NZB7 F1P2K5 P33879 Q07420 Q5ZIK2 Q5ZM59 Q98SH2 R4GK80	ATP10B ATP12A ATP1B3 ATP2A2 ATP2B1 ATP2B2 ATP4B ATP8A1 ATP8A2 ATP9A ATP9B CAMK2A PDZD11 PDZK11 PLN PMCA1 RCJMB04_3a16	Gallus gallus (chicken)
Activation of the phototransduction cascade	Cyclic nucleotide-gated channel rod photoreceptor subunit alpha Rhodopsin	F1P3Y2 Q90980	RHO	Gallus gallus (chicken)
Highly calcium permeable nicotinic acetylcholine receptors	Neuronal acetylcholine receptor subunit alpha-3 Neuronal acetylcholine receptor subunit alpha-4 Neuronal acetylcholine receptor subunit beta-4	F1P4U2 P09481 P09482	CHRNA3 CHRNA4 CHRNB4	Gallus gallus (chicken)
MHC class II antigen presentation	ADP-ribosylation factor AP complex subunit sigma AP-1 complex subunit gamma AP-1 complex subunit mu-1 AP-2 complex subunit alpha AP-2 complex subunit mu Cathepsin D Cathepsin V Clathrin light chain Endophilin-A1 Invariant chain isoform p41 MHC class II beta chain 2 Major histocompatibility complex class II beta chain BLB1 Peptidase C1A papain C-terminal domain-containing protein	A0A1D5NV94 A0A1D5PLI8 A0A3Q2U5N2 A5HUL4 F1NDA9 F1NHS7 F1NN08 F1NYJ1 Q05744 Q5ZMG7 Q5ZMK0 Q5ZMP6 Q6J613 Q8AXV1	AP1G1 AP1M1 AP1S2 AP2A2 AP2M1 ARF1 BLB1 BLB2 CLTA CTSD CTSV Ii RCJMB04_1m17 SH3GL2 SH3P4	Gallus gallus (chicken)
O-glycosylation of TSR domain-containing proteins	ADAM metallopeptidase with thrombospondin type 1 motif 15 ADAM metallopeptidase with thrombospondin type 1 motif 3 ADAM metallopeptidase with thrombospondin type 1 motif 5 ADAM metallopeptidase with thrombospondin type 1 motif 6 ADAM metallopeptidase with thrombospondin type 1 motif, 10 Semaphorin 5A	A0A1D5NZ82 E1BX45 E1C0H0 F1NVD1 F1P3S7 R4GFU3	ADAMTS10 ADAMTS15 ADAMTS3 ADAMTS5 ADAMTS6 SEMA5A	Gallus gallus (chicken)
FGFR2c ligand binding and activation	Fibroblast growth factor 1 Fibroblast growth factor 2 Fibroblast growth factor receptor 2 Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor Fibroblast growth factor	E1BZW7 F1P5Y5 P18461 P19596 P48800 Q197G3 Q4R0X9 Q9I950 R4GIR0	CEK3 FGF-18 FGF1 FGF18 FGF2 FGF23 FGF4 FGF6 FGF8 FGFR2 Fgf16	Gallus gallus (chicken)
O-linked glycosylation	Dolichyl-phosphate-mannose--protein mannosyltransferase Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2	F1NMM0 Q5NDE8	AGO61 GTDC2 POMGNT2 POMT1	Gallus gallus (chicken)
HATs acetylate histones	E3 ubiquitin-protein ligase MSL2 Histone H2A-IV Histone H2A.J Histone H2A Histone H2B 1/2/3/4/6 Histone H2B 5 Histone H2B 7 Histone H2B 8 Histone H2B Histone H2B Histone H3.2 Histone H4 Histone acetyltransferase type B catalytic subunit MSL complex subunit 3 Nuclear receptor coactivator Paired box 3	A0A1D5NVS8 A0A1D5PS75 A0A1D5PY49 A0A1L1RNY8 A0A3Q2UDI2 F1P5A3 P02263 P0C1H3 P0C1H4 P0C1H5 P62801 P70082 P84229 Q5F393 Q8QGS3 Q9PSW9	H2A-IX H2AFX H2B-I H2B-II H2B-III H2B-IV H2B-V H2B-VI H2B-VII H2B-VIII H3-I H3-II H3-III H3-IV H3-V H3-VI H3-VII H3-VIII H4-I H4-II H4-III H4-IV H4-V H4-VI H4-VII HAT1 HIST1H2B5L LOC426037 MSL2 MSL3 NCOA1 PAX3 Pax3	Gallus gallus (chicken)
O-linked glycosylation of mucins	Beta-1,4-galactosyltransferase C1GALT1 specific chaperone 1 Glucosaminyl (N-acetyl) transferase 1 Glucosaminyl (N-acetyl) transferase 4 Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Hexosyltransferase Hexosyltransferase Hexosyltransferase Polypeptide N-acetylgalactosaminyltransferase Polypeptide N-acetylgalactosaminyltransferase Polypeptide N-acetylgalactosaminyltransferase Polypeptide N-acetylgalactosaminyltransferase	A0A1D5PGR9 A0A1D5PJE0 A0A3S5ZPV4 E1BSH4 E1C241 E1C421 F1NIE6 F1NU59 Q5F3G7 Q5F4C7 Q5ZJL1 Q5ZK57	B3GNT2 B3GNT5 B3GNT9 B4GALT6 C1GALT1 C1GALT1C1 GALNT1 GALNT3 GALNT7 GCNT1 GCNT4 RCJMB04_1b1	Gallus gallus (chicken)
Digestion of dietary carbohydrate				Gallus gallus (chicken)	G58161NS G74621DY G93924TT G96370VA
EPHA-mediated growth cone collapse	GTP-binding protein Proto-oncogene tyrosine-protein kinase Src Tyrosine-protein kinase Yes Tyrosine-protein kinase	A0A3Q2U639 O93467 P00523 P09324	FYN RHOA SRC YES YES1 cRhoA rhoA	Gallus gallus (chicken)
Generic Transcription Pathway	C2H2-type domain-containing protein Cyclin-C Mediator of RNA polymerase II transcription subunit 17 Mediator of RNA polymerase II transcription subunit 1 Mediator of RNA polymerase II transcription subunit 20 Mediator of RNA polymerase II transcription subunit 30 Mediator of RNA polymerase II transcription subunit 31 Mediator of RNA polymerase II transcription subunit 4 Mediator of RNA polymerase II transcription subunit 7 Zinc finger protein 704 Zinc finger protein 706	A0A1D5NUC6 A0A1D5P8W2 A0A1D5PFE9 A0A1D5PK99 A0A1L1RJ75 E1BUI5 E1C6N9 F1NY10 P55168 Q5ZKY9 Q5ZMM5	CCNC LOC101747670 MED1 MED17 MED20 MED30 MED31 MED4 MED7 TRFP ZNF704 ZNF706	Gallus gallus (chicken)
Aspirin ADME	ABC-type glutathione-S-conjugate transporter Albumin Cytochrome P450 CYP2D49 Monocarboxylate transporter 1	A0A1D5NW68 F1NJG4 F1NM51 Q5ZLZ6	ABCC3 ALB CYP2D6 RCJMB04_4e8	Gallus gallus (chicken)
Opsins	Opsin 3 Opsin 5 Retinal G protein coupled receptor Retinal pigment epithelium-derived rhodopsin homolog Rhodopsin	E1C1F4 F1NEL9 F1NEY2 F1P193 F1P3Y2	OPN3 OPN5 RGR RHO RRH cOpn3m	Gallus gallus (chicken)
Synthesis of Prostaglandins (PG) and Thromboxanes (TX)	Hematopoietic prostaglandin D synthase Prostaglandin E synthase Prostaglandin G/H synthase 1 Prostaglandin G/H synthase 2	A0A1D5PM03 E2IPN6 O73888 P27607	CEF-147 GSTS HPGDS PGDS PTGDS2 PTGES PTGS1 PTGS2	Gallus gallus (chicken)
GRB2:SOS provides linkage to MAPK signaling for Integrins	Fibronectin Focal adhesion kinase 1 Growth factor receptor-bound protein 2 Integrin beta Proto-oncogene tyrosine-protein kinase Src Ras-related protein Rap-1b SOS Ras/Rac guanine nucleotide exchange factor 1 small monomeric GTPase	A0A1D5PEZ2 A3R0S3 F1NSA8 P00523 P11722 Q00944 Q5ZHX1 Q92071	FAK FAK1 FN1 GRB2 ITGB3 PTK2 RAP1A RAP1B SOS1 SRC	Gallus gallus (chicken)
Muscarinic acetylcholine receptors	Muscarinic acetylcholine receptor M2 Muscarinic acetylcholine receptor	F1P0I0 P30372	CHRM2 CHRM5 CM2	Gallus gallus (chicken)
Lectin pathway of complement activation	Collectin-10 Collectin-11 Mannose-binding protein	A0A3Q3A736 Q2LK95 Q98TA4	CL1 COLEC10 COLEC11 MBL	Gallus gallus (chicken)	G49108TO G57321FI
Other interleukin signaling	Caspase-3 Interferon lambda receptor 1 Interferon lambda-3 Interleukin 34 Myelomonocytic growth factor Synaptosomal-associated protein 25 Syndecan Taxilin alpha Tyrosine-protein kinase	A0A3Q3B2W9 B4ER10 F1NMJ9 F1NV24 K9JA28 O93417 P13854 P60878 R4GIU3	CASP3 IFNL IFNL3 IFNLR1 IL28 IL28B IL28RA IL34 JAK1 SDC1 SNAP SNAP25 TXLNA	Gallus gallus (chicken)

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