GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome November 12, 2024
ECODAB April 1, 2019
Displaying entries 76 - 100 of 361 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▲
TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
  • ECSIT
  • MAP3K1
  • TRAF6
Sus scrofa (pig)
Transport of bile salts and organic acids, metal ions and amine compounds
  • CTL2
  • CTL4
  • SLC10A6
  • SLC14A1
  • SLC14A2
  • SLC44A1
  • SLC44A2
  • SLC44A3
  • SLC44A4
  • SLC47A1
  • SLC47A2
  • TPPT1
Sus scrofa (pig)
PECAM1 interactions
  • FYN
  • INPP5D
  • ITGAV
  • ITGB3
  • LCK
  • LYN
  • PECAM1
  • PLCG1
  • PTPN11
  • SRC
  • YES1
Sus scrofa (pig)
Non-integrin membrane-ECM interactions
  • DDR1
  • DDR2
Sus scrofa (pig)
FMO oxidises nucleophiles
  • FMO-1
  • FMO1
  • FMO2
  • FMO3
Sus scrofa (pig)
FCGR activation
  • CD247
  • CD3G
  • FCGR1A
  • FCGR2B
  • FCGR3A
  • FYN
  • HCK
  • IGKV5-2
  • LOC100125542
  • LOC100523213
  • LYN
  • SRC
  • YES1
Sus scrofa (pig)
Adherens junctions interactions
  • AFDN
  • ANG
  • ANG1
  • CADM1
  • CADM2
  • CADM3
  • CDH1
  • CDH10
  • CDH11
  • CDH12
  • CDH15
  • CDH17
  • CDH18
  • CDH2
  • CDH24
  • CDH3
  • CDH4
  • CDH5
  • CDH6
  • CDH7
  • CDH9
  • CTNNA1
  • CTNNB1
  • CTNND1
  • JUP
  • Jup
  • NECTIN1
  • NECTIN2
  • NECTIN3
  • NECTIN4
Sus scrofa (pig)
Inactivation of CSF3 (G-CSF) signaling
  • CSF3
  • CSF3R
  • HCK
  • JAK1
  • JAK2
  • LYN
  • TYK2
Sus scrofa (pig)
APAP ADME
  • ABCC1
  • ABCC2
  • ABCC3
  • ABCC4
  • ABCC5
  • ABCG2
  • ABCG2A
  • ACY1
  • BMDP
  • CNDP2
  • CYP2E1
  • GGT1
  • GGT6
  • GGT7
  • GSTT1
  • LOC100153094
  • LOC100511540
  • LOC100515741
  • LOC100516628
  • LOC100623255
  • LOC100623504
  • LOC100739163
  • LOC110262115
  • SULT1A3
  • SULT1C4
  • SULT1E1
  • SULT2A1
  • UGT2B31
Sus scrofa (pig)
Ion channel transport
  • ATP6AP1
  • ATP6G2
  • ATP6V0A1
  • ATP6V0B
  • ATP6V0C
  • ATP6V0D1
  • ATP6V0D2
  • ATP6V0E2
  • ATP6V1B1
  • ATP6V1C1
  • ATP6V1C2
  • ATP6V1E1
  • ATP6V1G2
  • ATP6V1H
  • TCIRG1
Sus scrofa (pig)
RUNX1 regulates transcription of genes involved in differentiation of keratinocytes
  • CTSK
  • CTSL
Sus scrofa (pig)
O-linked glycosylation
  • B3GALNT2
  • B4GAT1
  • DAG1
  • LARGE1
  • LARGE2
  • POMGNT1
  • POMGNT2
  • POMK
  • POMT1
  • POMT2
Sus scrofa (pig)
Class A/1 (Rhodopsin-like receptors)
  • CMLKR1
  • CNR1
  • CNR2
  • GPBAR1
  • GPR132
  • GPR18
  • GPR183
  • GPR35
  • GPR39
  • GPR55
  • GPR68
  • HCAR2
  • MTNR1A
  • MTNR1B
  • PTAFR
  • SUCNR1
Sus scrofa (pig)
PI3K events in ERBB2 signaling
  • BTC
  • DTR
  • EGF
  • EGFR
  • ERBB2
  • ERBB3
  • ERBB4
  • EREG
  • GAB1
  • GRB2
  • HBEGF
  • HEGFL
  • NRG1
  • NRG2
  • NRG3
  • PIK3CA
  • PIK3R1
Sus scrofa (pig)
IRS-related events triggered by IGF1R
  • IGF1
  • IGF1R
  • IGF2
  • IRS1
  • IRS2
  • IRS4
Sus scrofa (pig)
RAC3 GTPase cycle
  • ABI1
  • ABI2
  • ABL2
  • ABR
  • AMIGO2
  • ARAP2
  • ARAP3
  • ARHGAP1
  • ARHGAP15
  • ARHGAP17
  • ARHGAP21
  • ARHGAP26
  • ARHGAP35
  • ARHGAP39
  • ARHGAP5
  • ARHGAP6
  • BAIAP2
  • BAIAP2L1
  • BCR
  • BRK1
  • CAV1
  • CDC42
  • CDC42EP1
  • CYBA
  • CYFIP1
  • DEPDC1B
  • DIAPH3
  • DOCK10
  • DSG2
  • EMD
  • EPHA2
  • ESYT1
  • FERMT2
  • GARRE1
  • GIT1
  • GIT2
  • GP91-PHOX
  • ITGB1
  • JAG1
  • KIAA0355
  • LAMTOR1
  • LBR
  • LMAN1
  • MCAM
  • MCF2
  • MPP7
  • NCF1
  • NCF2
  • NCF4
  • NCKAP1
  • NCKAP1L
  • NHS
  • NOX1
  • NOX3
  • NOXA1
  • NOXO1
  • OCRL
  • OPHN1
  • PAK1
  • PAK2
  • PGRMC2
  • PIK3R1
  • PIK3R2
  • PREX1
  • RAB7A
  • RAC3
  • RACGAP1
  • RAPGEF1
  • RBM39
  • SLC1A5
  • SLITRK3
  • SLITRK5
  • SNAP23
  • SRGAP2
  • SWAP70
  • SYDE1
  • TFRC
  • TIAM1
  • TRIO
  • VAMP3
  • VANGL1
  • VAV2
  • WASF2
  • YKT6
Sus scrofa (pig)
TNFR1-induced NF-kappa-B signaling pathway
  • BIRC2
  • CHUK
  • CYLD
  • GNB2L1
  • IKBKB
  • IKBKG
  • MAP3K7
  • OPTN
  • OTUD1
  • OTUD7B
  • PIAP
  • RACK1
  • RBCK1
  • RIPK1
  • RNF31
  • SPATA2
  • TAB1
  • TAB2
  • TAB3
  • TAK1b
  • TNF
  • TNFA
  • TNFAIP3
  • TNFRSF1A
  • TNFSF2
  • TRADD
  • TRAF1
  • TRAF2
  • USP2
  • USP21
  • USP4
Sus scrofa (pig)
Erythropoietin activates RAS
  • EPO
  • EPOR
  • GRB2
  • IRS2
  • JAK2
  • LYN
  • RAPGEF1
  • SHC1
  • VAV1
Sus scrofa (pig)
Integrin cell surface interactions
  • BSG
  • CD44
  • CD47
  • CDH1
  • COL13A1
  • COL16A1
  • COL18A1
  • COL4A1
  • COL4A2
  • COL4A3
  • COL4A4
  • COL9A1
  • COL9A2
  • COL9A3
  • COMP
  • F11R
  • FGA
  • FGB
  • FGG
  • FN1
  • IBSP
  • ICAM1
  • ICAM2
  • ICAM4
  • ICAM5
  • ITGA1
  • ITGA10
  • ITGA11
  • ITGA2
  • ITGA2B
  • ITGA3
  • ITGA4
  • ITGA5
  • ITGA6
  • ITGA8
  • ITGA9
  • ITGAD
  • ITGAE
  • ITGAL
  • ITGAM
  • ITGAV
  • ITGB1
  • ITGB2
  • ITGB3
  • ITGB5
  • ITGB6
  • ITGB7
  • ITGB8
  • JAM2
  • JAM3
  • LUM
  • MADCAM1
  • OPN
  • PECAM1
  • SPP1
  • THBS1
  • TNC
  • TNN
  • VCAM1
  • VTN
Sus scrofa (pig)
trans-Golgi Network Vesicle Budding
  • ARF1
  • GBF1
  • SNAP23
  • STX4
  • VAMP2
  • VAMP8
Sus scrofa (pig)
Elastic fibre formation
  • ELN
  • FBLN5
  • FBN2
  • FBN3
  • FURIN
  • LOX
  • LOXL1
  • LOXL2
  • LOXL3
  • LOXL4
  • MFAP2
  • MFAP5
Sus scrofa (pig)
Tandem of pore domain in a weak inwardly rectifying K+ channels (TWIK)
  • KCNK1
  • KCNK6
  • KCNK7
Sus scrofa (pig)
Na+/Cl- dependent neurotransmitter transporters
  • OCT2
  • SLC18A1
  • SLC22A1
  • SLC22A2
  • SLC6A1
  • SLC6A11
  • SLC6A12
  • SLC6A13
  • SLC6A14
  • SLC6A15
  • SLC6A18
  • SLC6A19
  • SLC6A2
  • SLC6A20
  • SLC6A3
  • SLC6A5
  • SLC6A6
  • SLC6A7
  • SLC6A9
Sus scrofa (pig)
DDX58/IFIH1-mediated induction of interferon-alpha/beta
  • HSP90A
  • HSP90AA1
  • HSP90AB1
  • HSPCA
  • IRF3
  • MAVS
  • TBK1
  • TOMM70
Sus scrofa (pig)
VEGFA-VEGFR2 Pathway
  • ABI1
  • ABI2
  • AXL
  • BAIAP2
  • BCAR1
  • BRK1
  • CDC42
  • CRK
  • CYBA
  • CYFIP1
  • CYFIP2
  • DOCK1
  • ELMO2
  • FYN
  • GP91-PHOX
  • HSP90A
  • HSP90AA1
  • HSPB1
  • HSPCA
  • ITGAV
  • ITGB3
  • KDR
  • MAPK11
  • MAPK12
  • MAPK13
  • MAPK14
  • MAPKAPK2
  • MAPKAPK3
  • NCF1
  • NCF2
  • NCF4
  • NCK1
  • NCK2
  • NCKAP1
  • NCKAP1L
  • PAK2
  • PIK3CA
  • PIK3CB
  • PIK3R1
  • PIK3R2
  • PTK2B
  • PXN
  • RAC1
  • RHOA
  • ROCK1
  • ROCK2
  • SH2D2A
  • SHB
  • SHC2
  • SRC
  • VAV1
  • VAV2
  • VEGFA
  • WASF2
  • WASF3
Sus scrofa (pig)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: February 17, 2025