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Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
vimentin
Summary
- Gene Symbol
-
- VIM
- Organism
- Homo sapiens (human)
Annotation
- Keyword
-
- 3D-structure
- Acetylation
- Cataract
- Cell membrane
- Coiled coil
- Cytoskeleton
- Direct protein sequencing
- Disease variant
- Glycoprotein
- Host-virus interaction
- Intermediate filament
- Isopeptide bond
- Nucleus
- Phosphoprotein
- Reference proteome
- S-nitrosylation
- Ubl conjugation
- Proteins
Gene Ontology (GO)
| GO Term | Evidence Code | PMID |
|---|---|---|
| regulation of mRNA stability | ||
| positive regulation of collagen biosynthetic process | ||
| cellular response to muramyl dipeptide | ||
| cellular response to type II interferon | ||
| Bergmann glial cell differentiation |
GO Hierarchy
biological process
cellular process [inference]
response to stimulus [inference]
biological regulation [inference]
regulation of biological process [inference]
regulation of metabolic process [inference]
positive regulation of biological process [inference]
regulation of cellular process [inference]
| GO Term | Evidence Code | PMID |
|---|---|---|
| intermediate filament cytoskeleton | ||
| focal adhesion | ||
| peroxisome | ||
| cell leading edge | ||
| microtubule organizing center |
GO Hierarchy
OrthoDB (Group)
- Group level
- Eukaryota
- Group Name
- Keratin
- Functional Category
-
- E: Amino acid transport and metabolism
- O: Posttranslational modification, protein turnover, chaperones
- T: Signal transduction mechanisms
| Gene Ontology |
|---|
| intermediate filament organization |
| InterPro |
|---|
| Intermediate filament protein, conserved site |
| Intermediate filament, rod domain |
Disease
- Disease Ontology
| DO ID | Disease Name | Source |
|---|---|---|
| DOID:0110248 | cataract 30 | |
| DOID:10652 | Alzheimer's disease | |
| DOID:12140 | Chagas disease | |
| DOID:12894 | Sjogren's syndrome | |
| DOID:13241 | Behcet's disease | |
| DOID:1936 | atherosclerosis | |
| DOID:2527 | nephrosis | |
| DOID:3393 | coronary artery disease | |
| DOID:3526 | cerebral infarction | |
| DOID:6432 | pulmonary hypertension |
Ortholog
| Species | Gene ID | OrthoDB | Alliance of Genome Resources | Orthologous MAtrix |
|---|---|---|---|---|
| 22352 | MGI:98932 | MOUSE32470 | ||
| 81818 | RGD:621646 | RATNO12180 | ||
| 140599 | ZFIN:ZDB-GENE-011212-3 | DANRE26261 | ||
| 180430 | WB:WBGene00002058 | |||
| 280955 | BOVIN04471 | |||
| 386600 | Xenbase:XB-GENE-6255792 | |||
| 386601 | Xenbase:XB-GENE-866225 | |||
| 393746 | ZFIN:ZDB-GENE-040426-1743 | |||
| 445691 | CIOIN10748 | |||
| 477991 | CANLF06531 |
