GlyCosmos Portal

Caenorhabditis elegans

Summary

Taxonomy ID: 6239
PubChem Taxonomy: 6239

Genes (186) Glycans (3) Glycoproteins (1454) Lectins (39) Pathways (499)

Displaying entries **276 - 300** of **499** in total

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Pathway Name	Protein Name ▼	UniProt ID	Gene Symbol	GlyTouCan ID
Keratan sulfate degradation	Beta-galactosidase Beta-hexosaminidase A Glycoside hydrolase 35 catalytic domain-containing protein	O76632 Q22492 Q27526	bgal-1 bgal-2 hex-1	G09546QO G20239CJ G27025MB G50451AA G80016QC G82768YB
TCF dependent signaling in response to WNT	Beta-catenin-like protein hmp-2	O44326	hmp-2
Apoptotic cleavage of cell adhesion proteins	Beta-catenin-like protein hmp-2 Cadherin-4 Cell death protein 3 Juxtamembrane domain-associated catenin OCEL domain-containing protein Tight junction protein ZO-1	O44326 P42573 Q19319 Q8I103 Q9N554 Q9U308	cdh-4 ced-3 ell-1 hmp-2 jac-1 zoo-1
Thrombin signalling through proteinase activated receptors (PARs)	Beta-arrestin arr-1 G Protein, Alpha subunit G protein gamma domain-containing protein G-protein coupled receptors family 1 profile domain-containing protein Guanine nucleotide-binding protein alpha-12 subunit Guanine nucleotide-binding protein subunit alpha Guanine nucleotide-binding protein subunit beta-1 Guanine nucleotide-binding protein subunit beta-2 Guanine nucleotide-binding protein subunit gamma Mitogen-activated protein kinase mpk-1 Tyrosine protein-kinase src-1	G5ECT6 G5EE56 G5EGU1 H2KZ99 P17343 P39745 P51485 P54406 Q19572 Q20636 Q9N4F4	arr-1 eat-11 egl-30 gbp-2 gnrr-4 gpa-12 gpa-17 gpb-1 gpb-2 gpc-1 gpc-2 mpk-1 src-1 sur-1
Inactivation, recovery and regulation of the phototransduction cascade	Beta-arrestin arr-1 Cyclic nucleotide-binding domain-containing protein Cyclic nucleotide-binding domain-containing protein Cyclic nucleotide-binding domain-containing protein Cyclic nucleotide-binding domain-containing protein Cyclic nucleotide-binding domain-containing protein Cyclic nucleotide-gated cation channel EF-hand domain-containing protein G protein-coupled receptor kinase 1 G-protein coupled receptors family 1 profile domain-containing protein Guanine nucleotide-binding protein subunit gamma Neuronal calcium sensor 2 Protein farnesyltransferase subunit beta Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha Receptor-type guanylate cyclase daf-11 Receptor-type guanylate cyclase gcy-10 Receptor-type guanylate cyclase gcy-11 Receptor-type guanylate cyclase gcy-12 Receptor-type guanylate cyclase gcy-13 Receptor-type guanylate cyclase gcy-14 Receptor-type guanylate cyclase gcy-15 Receptor-type guanylate cyclase gcy-17 Receptor-type guanylate cyclase gcy-18 Receptor-type guanylate cyclase gcy-19 Receptor-type guanylate cyclase gcy-1 Receptor-type guanylate cyclase gcy-20 Receptor-type guanylate cyclase gcy-21 Receptor-type guanylate cyclase gcy-22 Receptor-type guanylate cyclase gcy-23 Receptor-type guanylate cyclase gcy-25 Receptor-type guanylate cyclase gcy-27 Receptor-type guanylate cyclase gcy-29 Receptor-type guanylate cyclase gcy-2 Receptor-type guanylate cyclase gcy-3 Receptor-type guanylate cyclase gcy-4 Receptor-type guanylate cyclase gcy-5 Receptor-type guanylate cyclase gcy-6 Receptor-type guanylate cyclase gcy-7 Receptor-type guanylate cyclase gcy-8 Receptor-type guanylate cyclase gcy-9 Serine/threonine-protein phosphatase with EF-hands pef-1	A0A078BQP2 A8WI01 B1Q257 E7EAU8 G5EBX9 G5EEE2 G5EEE9 G5EFQ0 H2L002 N1NVB7 O01818 O16544 O16715 O44501 O61827 O62026 O62179 P36609 P51485 P54406 P91550 Q03611 Q09435 Q09537 Q10028 Q10029 Q18136 Q18331 Q19187 Q19752 Q19768 Q23310 Q23681 Q23682 Q7Z205 Q8I4N4 Q9GYQ4 Q9N4C1 Q9XTY1 Q9XU42 X5M8U1	CELE_F57C9.6 arr-1 cal-5 che-6 cng-1 cng-2 cng-3 daf-11 fnta-1 fntb-1 gcy-1 gcy-10 gcy-11 gcy-12 gcy-13 gcy-14 gcy-15 gcy-16 gcy-17 gcy-18 gcy-19 gcy-2 gcy-20 gcy-21 gcy-22 gcy-23 gcy-25 gcy-27 gcy-29 gcy-3 gcy-4 gcy-5 gcy-6 gcy-7 gcy-8 gcy-9 gpc-1 grk-1 ncs-2 odr-1 pef-1 tax-2 tax-4
RNA polymerase II transcribes snRNA genes	Beta-Casp domain-containing protein C3H1-type domain-containing protein CID domain-containing protein 1 CID domain-containing protein Cyclin-T1.1 Cyclin-T1.2 Cyclin-dependent kinase 7 Cyclin-like domain-containing protein DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 DUF3677 domain-containing protein General transcription factor IIF subunit 2 HTH TFE/IIEalpha-type domain-containing protein INTegrator complex Subunit homolog INTegrator complex Subunit homolog INTegrator complex Subunit homolog Integrator complex subunit 11 Integrator complex subunit 5 Integrator complex subunit 7 Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 OB domain-containing protein OCEL domain-containing protein PHD-type domain-containing protein Phosphorylated adapter RNA export protein Polyadenylation and cleavage factor homolog 11 Prion-like-(Q/N-rich)-domain-bearing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 Probable cyclin-dependent kinase 9 Protein asunder Putative RNA polymerase II subunit B1 CTD phosphatase rpap-2 RNA polymerase II subunit A C-terminal domain phosphatase ssup-72 RNA polymerase Rpb4/RPC9 core domain-containing protein SOSS complex subunit A homolog Serrate RNA effector molecule homolog TAFII28-like protein domain-containing protein TATA-box-binding protein Transcription initiation factor IIA subunit 2 Transcription initiation factor IIB Transcription initiation factor IIE subunit beta Transcription initiation factor IIF subunit alpha Transcription initiation factor TFIID subunit 13 Transcription initiation factor TFIID subunit 5 Transcription initiation factor TFIID subunit 6 Transcription initiation factor TFIID subunit 8 Transcription initiation factor TFIID subunit 9 VWFA domain-containing protein snRNA-activating protein complex subunit 1 snRNA-activating protein complex subunit 3 snRNA-activating protein complex subunit 4 homolog	A5Z2V1 B7WN63 E5QCH1 G5EDW9 G5EF68 G5EFV5 G5EG47 G5EG49 H2KML7 O01483 O01763 O02092 O16991 O17869 O18167 O44500 O44625 O45075 O45784 P16356 P30641 P32085 P34281 P34424 P34425 P91868 Q09345 Q10578 Q17558 Q17684 Q17694 Q17749 Q17957 Q19826 Q20361 Q22453 Q22805 Q7YTH5 Q8MYM8 Q93338 Q93594 Q95ZM2 Q965S0 Q965U6 Q966L5 Q9GR61 Q9GZI6 Q9N3C9 Q9N4E8 Q9N554 Q9N5K2 Q9NEX2 Q9TVL3 Q9U267 Q9U3I0 Q9U3K2 Q9XVH6 W6RQY9	C06G3.8 CELE_F53H1.4 CELE_T26A8.4 CELE_Y71H2B.2 E01A2.2 TFIIE-alpha TFIIE-beta ama-1 cbp-20 cbp-80 ccnk-1 cdk-7 cdk-9 cids-1 cids-2 cit-1.1 cit-1.2 dic-1 ell-1 gei-11 gtf-2A2 gtf-2E1 gtf-2E2 gtf-2F1 gtf-2F2 gtf-2e1 gtf-2e2 gtf-2f1 gtf-2f2 inst-1 ints-1 ints-11 ints-13 ints-2 ints-3 ints-4 ints-5 ints-6 ints-7 ints-8 ints-9 ncbp-1 ncbp-2 pcf-11 pqn-51 rpap-2 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 snpc-1.1 snpc-3.2 snpc-4 ssup-72 taf-10 taf-11.3 taf-13 taf-5 taf-6.1 taf-8 taf-9 tbp tbp-1 ttb-1
A tetrasaccharide linker sequence is required for GAG synthesis	Beta-1,3-galactosyltransferase sqv-2 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase sqv-8 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase GlyPicaN Ig-like domain-containing protein InTestinal NeureXin-like LONg Laminin G domain-containing protein Probable syndecan Thioredoxin domain-containing protein Titin homolog Xylosylprotein 4-beta-galactosyltransferase Xylosyltransferase sqv-6	A0A0K3AUF6 C6KRM7 G4SLH0 G5ECV3 G5EGU4 O02304 O17708 O17751 O45000 O62113 P34548 P50605 Q09363 Q18530 Q22574 Q965Q8 Q9N491 Q9XU73	C03H12.1 CELE_T19D12.6 glct-1 glct-2 glct-3 glct-4 glct-5 glct-6 gpn-1 itx-1 lon-2 rig-5 sdn-1 sqv-2 sqv-3 sqv-6 sqv-8 ttn-1
O-linked glycosylation of mucins	Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 C-type lectin domain-containing protein Calcineurin-interacting protein 2 Core-2/I-Branching enzyme EGF-like domain-containing protein EGF-like domain-containing protein GLY-16 GLYcosylation related GLYcosylation related Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 N-acetylgalactosaminide beta-1,3-galactosyltransferase N-acetylgalactosaminide beta-1,3-galactosyltransferase N-acetylgalactosaminide beta-1,3-galactosyltransferase N-acetylgalactosaminide beta-1,3-galactosyltransferase N-acetylgalactosaminide beta-1,3-galactosyltransferase N-acetylgalactosaminide beta-1,3-galactosyltransferase N-acetylgalactosaminide beta-1,3-galactosyltransferase N-acetylgalactosaminide beta-1,3-galactosyltransferase Polypeptide N-acetylgalactosaminyltransferase 3 Polypeptide N-acetylgalactosaminyltransferase 4 Probable N-acetylgalactosaminyltransferase 6 Probable N-acetylgalactosaminyltransferase 7 Probable N-acetylgalactosaminyltransferase 8 Probable N-acetylgalactosaminyltransferase 9 Putative polypeptide N-acetylgalactosaminyltransferase 10 Putative polypeptide N-acetylgalactosaminyltransferase 11 Uncharacterized protein F37A4.3	G5EBK7 G5ECK8 G5ECT3 G5EDP7 G5EEZ8 O02315 O16535 O17053 O17747 O18184 O44563 O45293 O45579 O45947 O61394 O61397 P34678 P41881 Q18515 Q19730 Q22900 Q7K755 Q8I136 Q9U2C4 Q9U2D6 Q9XUF9 Q9XWC4	C02H6.1 C16D9.6 C17A2.3 C38H2.2 C49C3.4 CELE_E03H4.3 CELE_F56H6.1 CELE_W09D10.5 CELE_Y38C1AB.1 F37A4.3 bus-4 cnp-2 gly-1 gly-10 gly-11 gly-15 gly-16 gly-17 gly-18 gly-19 gly-3 gly-4 gly-6 gly-7 gly-8 gly-9 paml-1
Retinoid metabolism and transport	Beta,beta-carotene 9',10'-oxygenase Beta,beta-carotene 9',10'-oxygenase Carotenoid oxygenase Fatty acid-binding protein homolog 5 Fatty acid-binding protein homolog 6 Fatty acid-binding protein homolog 7 Fatty acid-binding protein homolog 8 LiPocalin-Related protein Lipase_GDSL domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein NADP-dependent oxidoreductase domain-containing protein Probable 5-hydroxyisourate hydrolase R09H10.3 Probable 5-hydroxyisourate hydrolase ZK697.8	G5EEB8 H2L060 O01812 O01814 O02323 O02324 O44578 P91020 P91997 P91998 Q17568 Q18903 Q21274 Q21882 Q22352 Q23320 Q9N2Z4 Q9NAI5 Q9TXT9 Q9U2E4 Q9U2J5	C01G5.5 C07D8.6 C56G3.2 CELE_F49E10.2 CELE_F53F1.2 CELE_F53F1.3 CELE_K07C5.2 CELE_Y39G8B.1 CELE_Y39G8B.2 CELE_Y65B4BR.1 CELE_ZC443.1 R09H10.3 ZK697.8 bcmo-1 bcmo-2 exc-15 lbp-5 lbp-6 lbp-7 lbp-8 lpr-2
ISG15 antiviral mechanism	Beclin homolog Calponin-homology (CH) domain-containing protein E1 ubiquitin-activating enzyme E3 ubiquitin-protein ligase ari-1.1 E3 ubiquitin-protein ligase Eukaryotic initiation factor 4A Eukaryotic translation initiation factor 2-alpha kinase pek-1 Eukaryotic translation initiation factor 4E-1 Eukaryotic translation initiation factor 4E-2 Eukaryotic translation initiation factor 4E-3 Eukaryotic translation initiation factor 4E-4 Eukaryotic translation initiation factor 4E-5 HECT domain-containing protein Helicase ATP-binding domain-containing protein MIF4G domain-containing protein Mitogen-activated protein kinase mpk-1 Polyubiquitin-A Protein kinase domain-containing protein Protein phosphatase ppm-1.A RNA helicase RNA helicase Signal transducer and activator of transcription 1 Signal transducer and activator of transcription b TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 UBC core domain-containing protein Ubiquitin carboxyl-terminal hydrolase usp-48 Ubiquitin-conjugating enzyme E2 13 Ubiquitin-conjugating enzyme E2 ubc-18 Ubiquitin-like domain-containing protein X-linked retinitis pigmentosa GTPase regulator homolog	A0A061ACQ8 A0A486WX07 D3YT30 G5ECC7 G5EEM6 O01965 O44820 O45551 O61955 P0CG71 P27639 P39745 P56570 Q19192 Q19775 Q20617 Q20935 Q20977 Q21633 Q21693 Q22592 Q22888 Q27481 Q5DX34 Q93413 Q95XX0 Q9BL11 Q9BL61 Q9NAD6 U4PBJ9	CELE_F52C6.3 CELE_F57B9.3 CELE_T12G3.2 CELE_Y92H12A.2 ari-1.1 atg-6 bec-1 drh-3 eif-4A3 fln-1 glo-4 herc-1 ife-1 ife-2 ife-3 ife-4 ife-5 ifg-1 inf-1 mpk-1 pek-1 ppm-1.A sta-1 sta-2 stat-b sur-1 tap-1 uba-1 ubc-13 ubc-18 ubc-24 ubia ubq-1 usp-48
Glucagon-like Peptide-1 (GLP1) regulates insulin secretion	BTB domain-containing protein BTB domain-containing protein BTB domain-containing protein BTB domain-containing protein BTB domain-containing protein BTB domain-containing protein Inositol 1,4,5-trisphosphate receptor itr-1 Probable voltage-gated potassium channel subunit kvs-4 Rap guanine nucleotide exchange factor 1 Ras-related protein Rap-1 cAMP-dependent protein kinase catalytic subunit	A0A4V0INI0 G5EC00 H2KZQ6 J3K003 P21137 P34578 Q18246 Q20381 Q9XXD1 Q9Y0A1 U4PLR3	dec-4 epac-1 exp-2 itr-1 kin-1 kvs-1 kvs-2 kvs-3 kvs-4 kvs-5 lfe-1 rap-1 shw-1
RNA Pol II CTD phosphorylation and interaction with CE	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 RNA polymerase Rpb4/RPC9 core domain-containing protein Transcription elongation factor SPT5 Transcription initiation factor IIF subunit alpha mRNA cap guanine-N7 methyltransferase mRNA-capping enzyme	G5EFV5 K8F7X5 O02092 O17245 O44499 P16356 P34567 Q09645 Q10578 Q17558 Q17607 Q17684 Q19826 Q21338 Q8MYM8 Q93338 Q95PZ4 Q965S0 Q9GR61 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9U3I0 Q9XVH6 Q9XVS1	ama-1 cdk-7 cel-1 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 mnat-1 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 spt-5 tag-72 xpb-1 xpd-1
mRNA Capping	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 RNA polymerase Rpb4/RPC9 core domain-containing protein Transcription elongation factor SPT5 Transcription initiation factor IIF subunit alpha mRNA cap guanine-N7 methyltransferase mRNA-capping enzyme	G5EFV5 K8F7X5 O01763 O02092 O17245 O44499 P16356 P34567 Q09645 Q10578 Q17558 Q17607 Q17684 Q19826 Q21338 Q8MYM8 Q93338 Q93594 Q95PZ4 Q965S0 Q9GR61 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9U3I0 Q9XVH6 Q9XVS1	ama-1 cbp-20 cbp-80 cdk-7 cel-1 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 mnat-1 ncbp-1 ncbp-2 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 spt-5 tag-72 xpb-1 xpd-1
Formation of the Early Elongation Complex	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 RNA polymerase II subunit A C-terminal domain phosphatase RNA polymerase Rpb4/RPC9 core domain-containing protein Transcription elongation factor SPT4 Transcription elongation factor SPT5 Transcription initiation factor IIF subunit alpha	G5EFV5 K8F7X5 O01763 O02092 O17245 O44499 P16356 P34567 Q09645 Q10578 Q17558 Q17684 Q19826 Q21338 Q8MYM8 Q93338 Q93594 Q95PZ4 Q95QG8 Q965S0 Q9GR61 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9TZ93 Q9U3I0 Q9XVH6	ama-1 cbp-20 cbp-80 cdk-7 fcp-1 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 mnat-1 ncbp-1 ncbp-2 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 spt-4 spt-5 xpb-1 xpd-1
RNA Polymerase II Transcription Initiation	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 HTH TFE/IIEalpha-type domain-containing protein PHD-type domain-containing protein Prion-like-(Q/N-rich)-domain-bearing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 RNA polymerase Rpb4/RPC9 core domain-containing protein RNA-binding protein FUS TAFII28-like protein domain-containing protein TAFII55 protein conserved region domain-containing protein TAFII55 protein conserved region domain-containing protein TATA-box-binding protein Transcription initiation factor IIA subunit 2 Transcription initiation factor IIB Transcription initiation factor IIE subunit beta Transcription initiation factor IIF subunit alpha Transcription initiation factor TFIID subunit 10 Transcription initiation factor TFIID subunit 12 Transcription initiation factor TFIID subunit 13 Transcription initiation factor TFIID subunit 1 Transcription initiation factor TFIID subunit 2 Transcription initiation factor TFIID subunit 4 Transcription initiation factor TFIID subunit 5 Transcription initiation factor TFIID subunit 6 Transcription initiation factor TFIID subunit 9	E9P861 G5EF68 G5EFV5 G5EG47 G5EG49 G5EGM3 K8F7X5 O02092 O16991 O17245 O44499 O44625 O45784 O61707 P16356 P32085 P34567 Q09645 Q10578 Q17558 Q17684 Q17957 Q18265 Q19826 Q20361 Q20788 Q8MYM8 Q93338 Q95PZ4 Q95ZS0 Q965S0 Q9GR61 Q9GZI6 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9NEW8 Q9NEX2 Q9TYN3 Q9U226 Q9U3I0 Q9XVH6	TFIIE-alpha TFIIE-beta ama-1 cdk-7 fust-1 gtf-2A2 gtf-2E1 gtf-2E2 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2e1 gtf-2e2 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 mnat-1 pqn-51 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 taf-1 taf-10 taf-11 taf-11.3 taf-12 taf-13 taf-2 taf-3 taf-4 taf-5 taf-6.1 taf-7.1 taf-7.2 taf-9 tbp tbp-1 ttb-1 xpb-1 xpd-1
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 HTH TFE/IIEalpha-type domain-containing protein PHD-type domain-containing protein Prion-like-(Q/N-rich)-domain-bearing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 RNA polymerase Rpb4/RPC9 core domain-containing protein RNA-binding protein FUS TAFII28-like protein domain-containing protein TAFII55 protein conserved region domain-containing protein TAFII55 protein conserved region domain-containing protein TATA-box-binding protein Transcription initiation factor IIA subunit 2 Transcription initiation factor IIB Transcription initiation factor IIE subunit beta Transcription initiation factor IIF subunit alpha Transcription initiation factor TFIID subunit 10 Transcription initiation factor TFIID subunit 12 Transcription initiation factor TFIID subunit 13 Transcription initiation factor TFIID subunit 1 Transcription initiation factor TFIID subunit 2 Transcription initiation factor TFIID subunit 4 Transcription initiation factor TFIID subunit 5 Transcription initiation factor TFIID subunit 6 Transcription initiation factor TFIID subunit 9	E9P861 G5EF68 G5EFV5 G5EG47 G5EG49 G5EGM3 K8F7X5 O02092 O16991 O17245 O44499 O44625 O45784 O61707 P16356 P32085 P34567 Q09645 Q10578 Q17558 Q17684 Q17957 Q18265 Q19826 Q20361 Q20788 Q8MYM8 Q93338 Q95PZ4 Q95ZS0 Q965S0 Q9GR61 Q9GZI6 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9NEW8 Q9NEX2 Q9TYN3 Q9U226 Q9U3I0 Q9XVH6	TFIIE-alpha TFIIE-beta ama-1 cdk-7 fust-1 gtf-2A2 gtf-2E1 gtf-2E2 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2e1 gtf-2e2 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 mnat-1 pqn-51 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 taf-1 taf-10 taf-11 taf-11.3 taf-12 taf-13 taf-2 taf-3 taf-4 taf-5 taf-6.1 taf-7.1 taf-7.2 taf-9 tbp tbp-1 ttb-1 xpb-1 xpd-1
RNA Polymerase II Transcription Initiation And Promoter Clearance	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 HTH TFE/IIEalpha-type domain-containing protein PHD-type domain-containing protein Prion-like-(Q/N-rich)-domain-bearing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 RNA polymerase Rpb4/RPC9 core domain-containing protein RNA-binding protein FUS TAFII28-like protein domain-containing protein TAFII55 protein conserved region domain-containing protein TAFII55 protein conserved region domain-containing protein TATA-box-binding protein Transcription initiation factor IIA subunit 2 Transcription initiation factor IIB Transcription initiation factor IIE subunit beta Transcription initiation factor IIF subunit alpha Transcription initiation factor TFIID subunit 10 Transcription initiation factor TFIID subunit 12 Transcription initiation factor TFIID subunit 13 Transcription initiation factor TFIID subunit 1 Transcription initiation factor TFIID subunit 2 Transcription initiation factor TFIID subunit 4 Transcription initiation factor TFIID subunit 5 Transcription initiation factor TFIID subunit 6 Transcription initiation factor TFIID subunit 9	E9P861 G5EF68 G5EFV5 G5EG47 G5EG49 G5EGM3 K8F7X5 O02092 O16991 O17245 O44499 O44625 O45784 O61707 P16356 P32085 P34567 Q09645 Q10578 Q17558 Q17684 Q17957 Q18265 Q19826 Q20361 Q20788 Q8MYM8 Q93338 Q95PZ4 Q95ZS0 Q965S0 Q9GR61 Q9GZI6 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9NEW8 Q9NEX2 Q9TYN3 Q9U226 Q9U3I0 Q9XVH6	TFIIE-alpha TFIIE-beta ama-1 cdk-7 fust-1 gtf-2A2 gtf-2E1 gtf-2E2 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2e1 gtf-2e2 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 mnat-1 pqn-51 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 taf-1 taf-10 taf-11 taf-11.3 taf-12 taf-13 taf-2 taf-3 taf-4 taf-5 taf-6.1 taf-7.1 taf-7.2 taf-9 tbp tbp-1 ttb-1 xpb-1 xpd-1
RNA Polymerase II Promoter Escape	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cyclin-dependent kinase 7 DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 HTH TFE/IIEalpha-type domain-containing protein PHD-type domain-containing protein Prion-like-(Q/N-rich)-domain-bearing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 RNA polymerase Rpb4/RPC9 core domain-containing protein RNA-binding protein FUS TAFII28-like protein domain-containing protein TAFII55 protein conserved region domain-containing protein TAFII55 protein conserved region domain-containing protein TATA-box-binding protein Transcription initiation factor IIA subunit 2 Transcription initiation factor IIB Transcription initiation factor IIE subunit beta Transcription initiation factor IIF subunit alpha Transcription initiation factor TFIID subunit 10 Transcription initiation factor TFIID subunit 12 Transcription initiation factor TFIID subunit 13 Transcription initiation factor TFIID subunit 1 Transcription initiation factor TFIID subunit 2 Transcription initiation factor TFIID subunit 4 Transcription initiation factor TFIID subunit 5 Transcription initiation factor TFIID subunit 6 Transcription initiation factor TFIID subunit 9	E9P861 G5EF68 G5EFV5 G5EG47 G5EG49 G5EGM3 K8F7X5 O02092 O16991 O17245 O44499 O44625 O45784 O61707 P16356 P32085 P34567 Q09645 Q10578 Q17558 Q17684 Q17957 Q18265 Q19826 Q20361 Q20788 Q8MYM8 Q93338 Q95PZ4 Q95ZS0 Q965S0 Q9GR61 Q9GZI6 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9NEW8 Q9NEX2 Q9TYN3 Q9U226 Q9U3I0 Q9XVH6	TFIIE-alpha TFIIE-beta ama-1 cdk-7 fust-1 gtf-2A2 gtf-2E1 gtf-2E2 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2e1 gtf-2e2 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 mnat-1 pqn-51 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 taf-1 taf-10 taf-11 taf-11.3 taf-12 taf-13 taf-2 taf-3 taf-4 taf-5 taf-6.1 taf-7.1 taf-7.2 taf-9 tbp tbp-1 ttb-1 xpb-1 xpd-1
TP53 Regulates Transcription of DNA Repair Genes	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cyclin-T1.1 Cyclin-T1.2 Cyclin-dependent kinase 12 Cyclin-dependent kinase 7 Cyclin-like domain-containing protein DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Elongin-C FACT complex subunit SSRP1-A FACT complex subunit spt-16 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 OCEL domain-containing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 Probable cyclin-dependent kinase 9 Putative transcription elongation factor S-II RNA polymerase II subunit A C-terminal domain phosphatase RNA polymerase II transcription factor SIII p18 subunit RNA polymerase Rpb4/RPC9 core domain-containing protein Transcription elongation factor B polypeptide 3 Transcription elongation factor SPT4 Transcription elongation factor SPT5 Transcription initiation factor IIF subunit alpha	G5ECR7 G5EFV5 K8F7X5 O02092 O17245 O17869 O44499 P16356 P34424 P34425 P34567 P41848 P46551 P52652 Q09413 Q09645 Q10578 Q17558 Q17684 Q19826 Q21338 Q8MYM8 Q93338 Q95PZ4 Q95QG8 Q965S0 Q9BKS1 Q9GR61 Q9N390 Q9N3C9 Q9N3L2 Q9N554 Q9N5K2 Q9N5R9 Q9TVL3 Q9TZ93 Q9U3I0 Q9XVH6	3L686 T24H10.1 ama-1 ccnk-1 cdk-12 cdk-7 cdk-9 cdtl-7 cit-1.1 cit-1.2 elb-1 elc-1 ell-1 fcp-1 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 hmg-4 mnat-1 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 spt-16 spt-4 spt-5 tceb-3 xpb-1 xpd-1
Dual incision in TC-NER	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cullin-4 Cyclin-dependent kinase 7 DNA damage-binding protein 1 DNA polymerase delta catalytic subunit DNA polymerase delta subunit 3 DNA polymerase epsilon catalytic subunit DNA polymerase epsilon subunit 3 DNA polymerase kappa DNA repair and recombination protein RAD54-like DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 ERCC1-like central domain-containing protein ERCC4 domain-containing protein General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 Intron-binding protein aquarius Polyubiquitin-A Pre-mRNA-processing factor 19 Pre-mRNA-splicing factor SYF1 Probable DNA polymerase delta small subunit Probable DNA polymerase epsilon subunit 2 Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 Probable replication factor A 73 kDa subunit Probable replication factor C subunit 5 Proliferating cell nuclear antigen Protein isy-1 Putative transcription elongation factor S-II RING-box protein 1 RNA polymerase Rpb4/RPC9 core domain-containing protein RPA_C domain-containing protein Replication factor C subunit 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication factor C subunit 4 UV-stimulated scaffold protein A homolog Ubiquitin carboxyl-terminal hydrolase 7 Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein Ubiquitin-ribosomal protein eL40 fusion protein WD_REPEATS_REGION domain-containing protein XPA C-terminal domain-containing protein Zinc finger protein 830	G5EBZ1 G5EFV5 K8F7X5 O02092 O02115 O17245 O44175 O44499 O62218 P0CG71 P16356 P34409 P34429 P34567 P37165 P49632 P52652 P53016 P90829 P91175 P91356 Q09645 Q10051 Q10578 Q17392 Q17684 Q18547 Q18841 Q18963 Q19196 Q19366 Q19537 Q19826 Q20716 Q21302 Q21554 Q21730 Q22139 Q22798 Q23088 Q23457 Q7JKC3 Q86D18 Q93338 Q93456 Q95PZ4 Q965S0 Q9GR61 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9U1Q7 Q9U3I0 Q9XVH6	CELE_F53H4.6 CELE_R04F11.3 CELE_T26A5.8 F10C2.4 F12F6.7 F44B9.8 T24H10.1 ama-1 cdk-7 csa-1 cul-4 ddb-1 emb-4 ercc-1 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2h1 gtf-2h3 isy-1 math-33 mnat-1 pcn-1 pole-1 pole-2 polk-1 prp-19 rbx-1 rfc-1 rfc-2 rfc-3 rfc-4 rpa-1 rpa-4 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 sel-13 syf-1 ubia ubib ubl-1 ubq-1 ubq-2 usp-7 uvs-1 xpa-1 xpb-1 xpd-1 xpf-1
Gap-filling DNA repair synthesis and ligation in TC-NER	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cullin-4 Cyclin-dependent kinase 7 DNA damage-binding protein 1 DNA ligase 1 DNA polymerase delta catalytic subunit DNA polymerase delta subunit 3 DNA polymerase epsilon catalytic subunit DNA polymerase epsilon subunit 3 DNA polymerase kappa DNA repair and recombination protein RAD54-like DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 Intron-binding protein aquarius Polyubiquitin-A Pre-mRNA-processing factor 19 Pre-mRNA-splicing factor SYF1 Probable DNA polymerase delta small subunit Probable DNA polymerase epsilon subunit 2 Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 Probable replication factor A 73 kDa subunit Probable replication factor C subunit 5 Proliferating cell nuclear antigen Protein isy-1 Putative transcription elongation factor S-II RING-box protein 1 RNA polymerase Rpb4/RPC9 core domain-containing protein RPA_C domain-containing protein Replication factor C subunit 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication factor C subunit 4 UV-stimulated scaffold protein A homolog Ubiquitin carboxyl-terminal hydrolase 7 Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein Ubiquitin-ribosomal protein eL40 fusion protein WD_REPEATS_REGION domain-containing protein Zinc finger protein 830	G5EFV5 K8F7X5 O02092 O02115 O17245 O44175 O44499 O62218 P0CG71 P16356 P34409 P34429 P34567 P37165 P49632 P52652 P53016 P90829 P91175 P91356 Q09645 Q10051 Q10578 Q17392 Q17684 Q18547 Q18841 Q18963 Q19196 Q19366 Q19537 Q19826 Q20716 Q21554 Q21730 Q22139 Q22798 Q23088 Q23457 Q27474 Q7JKC3 Q86D18 Q93338 Q95PZ4 Q965S0 Q9GR61 Q9N390 Q9N3C9 Q9N3L2 Q9N5K2 Q9U1Q7 Q9U3I0 Q9XVH6	CELE_F53H4.6 CELE_R04F11.3 CELE_T26A5.8 F10C2.4 F12F6.7 F44B9.8 T24H10.1 ama-1 cdk-7 csa-1 cul-4 ddb-1 emb-4 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2h1 gtf-2h3 isy-1 lig-1 math-33 mnat-1 pcn-1 pole-1 pole-2 polk-1 prp-19 rbx-1 rfc-1 rfc-2 rfc-3 rfc-4 rpa-1 rpa-4 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 sel-13 syf-1 ubia ubib ubl-1 ubq-1 ubq-2 usp-7 uvs-1 xpb-1 xpd-1
RNA Polymerase II Transcription Elongation	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cell division cycle protein 73 Cyclin-T1.1 Cyclin-T1.2 Cyclin-dependent kinase 7 Cyclin-like domain-containing protein DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Ell-associated factor Eaf Elongin-C FACT complex subunit SSRP1-A FACT complex subunit spt-16 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 IWS1-like protein OCEL domain-containing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 Probable cyclin-dependent kinase 9 Putative transcription elongation factor S-II RNA polymerase II subunit A C-terminal domain phosphatase RNA polymerase II transcription factor SIII p18 subunit RNA polymerase II-associated factor 1 homolog RNA polymerase Rpb4/RPC9 core domain-containing protein RNA polymerase-associated protein CTR9 RNA polymerase-associated protein LEO1 Suppressor of Ty 6 homolog Transcription elongation factor B polypeptide 3 Transcription elongation factor SPT4 Transcription elongation factor SPT5 Transcription initiation factor IIF subunit alpha WD_REPEATS_REGION domain-containing protein	A5Z2V7 G5ECR7 G5EFV5 K8F7X5 O02092 O17245 O17869 O44499 P16356 P34424 P34425 P34567 P34703 P41848 P52652 P90783 Q03560 Q09413 Q09645 Q10578 Q17431 Q17558 Q17684 Q19375 Q19826 Q21338 Q8MYM8 Q93338 Q95PZ4 Q95QG8 Q965S0 Q9BKS1 Q9GR61 Q9N390 Q9N3C9 Q9N3L2 Q9N554 Q9N5K2 Q9N5R9 Q9N5U5 Q9TVL3 Q9TXQ9 Q9TZ93 Q9U3I0 Q9XVH6	3L686 CELE_F02E9.10 F13B12.1 T24H10.1 ama-1 ccnk-1 cdc-73 cdk-7 cdk-9 cit-1.1 cit-1.2 ctr-9 eaf-1 elb-1 elc-1 ell-1 emb-5 fcp-1 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 hmg-4 leo-1 mnat-1 pafo-1 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 spt-16 spt-4 spt-5 tceb-3 tpr-3 xpb-1 xpd-1
Formation of RNA Pol II elongation complex	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cell division cycle protein 73 Cyclin-T1.1 Cyclin-T1.2 Cyclin-dependent kinase 7 Cyclin-like domain-containing protein DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Ell-associated factor Eaf Elongin-C FACT complex subunit SSRP1-A FACT complex subunit spt-16 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 IWS1-like protein OCEL domain-containing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 Probable cyclin-dependent kinase 9 Putative transcription elongation factor S-II RNA polymerase II subunit A C-terminal domain phosphatase RNA polymerase II transcription factor SIII p18 subunit RNA polymerase II-associated factor 1 homolog RNA polymerase Rpb4/RPC9 core domain-containing protein RNA polymerase-associated protein CTR9 RNA polymerase-associated protein LEO1 Suppressor of Ty 6 homolog Transcription elongation factor B polypeptide 3 Transcription elongation factor SPT4 Transcription elongation factor SPT5 Transcription initiation factor IIF subunit alpha WD_REPEATS_REGION domain-containing protein	A5Z2V7 G5ECR7 G5EFV5 K8F7X5 O02092 O17245 O17869 O44499 P16356 P34424 P34425 P34567 P34703 P41848 P52652 P90783 Q03560 Q09413 Q09645 Q10578 Q17431 Q17558 Q17684 Q19375 Q19826 Q21338 Q8MYM8 Q93338 Q95PZ4 Q95QG8 Q965S0 Q9BKS1 Q9GR61 Q9N390 Q9N3C9 Q9N3L2 Q9N554 Q9N5K2 Q9N5R9 Q9N5U5 Q9TVL3 Q9TXQ9 Q9TZ93 Q9U3I0 Q9XVH6	3L686 CELE_F02E9.10 F13B12.1 T24H10.1 ama-1 ccnk-1 cdc-73 cdk-7 cdk-9 cit-1.1 cit-1.2 ctr-9 eaf-1 elb-1 elc-1 ell-1 emb-5 fcp-1 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 hmg-4 leo-1 mnat-1 pafo-1 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 spt-16 spt-4 spt-5 tceb-3 tpr-3 xpb-1 xpd-1
RNA Polymerase II Pre-transcription Events	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 Cell division cycle protein 73 Cyclin-T1.1 Cyclin-T1.2 Cyclin-dependent kinase 7 Cyclin-like domain-containing protein DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Ell-associated factor Eaf Elongin-C FACT complex subunit SSRP1-A FACT complex subunit spt-16 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIF subunit 2 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 HTH TFE/IIEalpha-type domain-containing protein IWS1-like protein Nuclear cap-binding protein subunit 1 Nuclear cap-binding protein subunit 2 OCEL domain-containing protein PHD-type domain-containing protein Prion-like-(Q/N-rich)-domain-bearing protein Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 Probable cyclin-dependent kinase 9 Putative transcription elongation factor S-II RNA polymerase II subunit A C-terminal domain phosphatase RNA polymerase II transcription factor SIII p18 subunit RNA polymerase II-associated factor 1 homolog RNA polymerase Rpb4/RPC9 core domain-containing protein RNA polymerase-associated protein CTR9 RNA polymerase-associated protein LEO1 RNA-binding protein FUS Suppressor of Ty 6 homolog TAFII28-like protein domain-containing protein TAFII55 protein conserved region domain-containing protein TAFII55 protein conserved region domain-containing protein TATA-box-binding protein Transcription elongation factor B polypeptide 3 Transcription elongation factor SPT4 Transcription elongation factor SPT5 Transcription initiation factor IIA subunit 2 Transcription initiation factor IIB Transcription initiation factor IIE subunit beta Transcription initiation factor IIF subunit alpha Transcription initiation factor TFIID subunit 10 Transcription initiation factor TFIID subunit 12 Transcription initiation factor TFIID subunit 13 Transcription initiation factor TFIID subunit 1 Transcription initiation factor TFIID subunit 2 Transcription initiation factor TFIID subunit 4 Transcription initiation factor TFIID subunit 5 Transcription initiation factor TFIID subunit 6 Transcription initiation factor TFIID subunit 9 WD_REPEATS_REGION domain-containing protein	A5Z2V7 E9P861 G5ECR7 G5EF68 G5EFV5 G5EG47 G5EG49 G5EGM3 K8F7X5 O01763 O02092 O16991 O17245 O17869 O44499 O44625 O45784 O61707 P16356 P32085 P34424 P34425 P34567 P34703 P41848 P52652 P90783 Q03560 Q09413 Q09645 Q10578 Q17431 Q17558 Q17684 Q17957 Q18265 Q19375 Q19826 Q20361 Q20788 Q21338 Q8MYM8 Q93338 Q93594 Q95PZ4 Q95QG8 Q95ZS0 Q965S0 Q9BKS1 Q9GR61 Q9GZI6 Q9N390 Q9N3C9 Q9N3L2 Q9N554 Q9N5K2 Q9N5R9 Q9N5U5 Q9NEW8 Q9NEX2 Q9TVL3 Q9TXQ9 Q9TYN3 Q9TZ93 Q9U226 Q9U3I0 Q9XVH6	3L686 CELE_F02E9.10 F13B12.1 T24H10.1 TFIIE-alpha TFIIE-beta ama-1 cbp-20 cbp-80 ccnk-1 cdc-73 cdk-7 cdk-9 cit-1.1 cit-1.2 ctr-9 eaf-1 elb-1 elc-1 ell-1 emb-5 fcp-1 fust-1 gtf-2A2 gtf-2E1 gtf-2E2 gtf-2F1 gtf-2F2 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2e1 gtf-2e2 gtf-2f1 gtf-2f2 gtf-2h1 gtf-2h3 hmg-4 leo-1 mnat-1 ncbp-1 ncbp-2 pafo-1 pqn-51 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 spt-16 spt-4 spt-5 taf-1 taf-10 taf-11 taf-11.3 taf-12 taf-13 taf-2 taf-3 taf-4 taf-5 taf-6.1 taf-7.1 taf-7.2 taf-9 tbp tbp-1 tceb-3 tpr-3 ttb-1 xpb-1 xpd-1
Formation of TC-NER Pre-Incision Complex	BSD domain-containing protein CDK-activating kinase assembly factor MAT1 COP9 signalosome complex subunit 1 COP9 signalosome complex subunit 2 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 5 COP9 signalosome complex subunit 6 Cullin-4 Cyclin-dependent kinase 7 DNA damage-binding protein 1 DNA repair and recombination protein RAD54-like DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit rpb-9 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 General transcription and DNA repair factor IIH helicase subunit XPB General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH subunit TFB5 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 Intron-binding protein aquarius Polyubiquitin-A Pre-mRNA-processing factor 19 Pre-mRNA-splicing factor SYF1 Probable DNA-directed RNA polymerase II subunit RPB11 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 Protein isy-1 Putative transcription elongation factor S-II RING-box protein 1 RNA polymerase Rpb4/RPC9 core domain-containing protein UV-stimulated scaffold protein A homolog Ubiquitin carboxyl-terminal hydrolase 7 Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein Ubiquitin-ribosomal protein eL40 fusion protein WD_REPEATS_REGION domain-containing protein XPA C-terminal domain-containing protein Zinc finger protein 830	G5EFV5 K8F7X5 O01422 O02092 O17245 O44499 P0CG71 P16356 P34567 P37165 P49632 P52652 P91001 P91175 Q09645 Q10051 Q10578 Q17392 Q17684 Q18963 Q19826 Q20716 Q21302 Q21554 Q22139 Q23088 Q23457 Q7JKC3 Q86D18 Q93338 Q95PZ0 Q95PZ4 Q965S0 Q9GR61 Q9GS00 Q9N359 Q9N390 Q9N3C9 Q9N3L2 Q9N425 Q9N5K2 Q9U1Q7 Q9U3I0 Q9XVH6	CELE_F53H4.6 T24H10.1 ama-1 cdk-7 csa-1 csn-1 csn-2 csn-3 csn-4 csn-5 csn-6 cul-4 ddb-1 emb-4 gtf-2H1 gtf-2H2C gtf-2H3 gtf-2H4 gtf-2H5 gtf-2h1 gtf-2h3 isy-1 math-33 mnat-1 prp-19 rbx-1 rpb-1 rpb-10 rpb-11 rpb-12 rpb-2 rpb-3 rpb-4 rpb-5 rpb-6 rpb-7 rpb-8 rpb-9 sel-13 syf-1 ubia ubib ubl-1 ubq-1 ubq-2 usp-7 uvs-1 xpa-1 xpb-1 xpd-1

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