GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 26 - 50 of 557 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▼
Hyaluronan biosynthesis and export
  • ABCC5
  • CEMIP
  • DERPC
  • HAS1
  • HAS2
Bos taurus (cattle)
Hyaluronan uptake and degradation
  • CD44
  • CHP
  • CHP1
  • CRSBP1
  • GUSB
  • HEXA
  • HEXB
  • HMMR
  • HYAL1
  • HYAL2
  • HYAL3
  • LYVE1
  • STAB2
  • XLKD1
Bos taurus (cattle)
Pentose phosphate pathway
  • DERA
  • G6PD
  • PGD
  • PGLS
  • PGM2
  • RBKS
  • RPE
  • RPIA
  • SHPK
  • TALDO1
  • TKT
Bos taurus (cattle)
CS/DS degradation
  • ARSB
  • BCAN
  • BGN
  • CSPG2
  • CSPG4
  • CSPG5
  • DCN
  • HEXA
  • HEXB
  • HYAL1
  • HYAL3
  • IDS
  • IDUA
  • NCAN
  • VCAN
Bos taurus (cattle)
Scavenging by Class A Receptors
  • APOB
  • CLP1
  • COLEC11
  • COLEC12
  • MASP1
Bos taurus (cattle)
Glycosphingolipid catabolism
  • ARSA
  • ARSB
  • ARSE
  • ARSG
  • ARSH
  • ARSI
  • ARSK
  • ARSL
  • ASAH1
  • ASAH2
  • CTSA
  • ENPP7
  • GALC
  • GBA1
  • GBA2
  • GBA3
  • GLA
  • GLB1
  • GLB1L
  • GLB1L2
  • GM2A
  • HEXA
  • HEXB
  • M6PR
  • NEU1
  • NEU2
  • NEU3
  • NEU4
  • PSAP
  • SMPD1
  • SMPD3
  • SMPD4
  • STS
  • SUMF1
  • SUMF2
Bos taurus (cattle)
Keratan sulfate degradation
  • ACAN
  • FMOD
  • GLB1
  • GLB1L
  • GLB1L2
  • GNS
  • HEXA
  • HEXB
  • KERA
  • LDC
  • LUM
  • OMD
  • PRELP
Bos taurus (cattle)
N-glycan trimming in the ER and Calnexin/Calreticulin cycle
  • AMFR
  • DERL1
  • ENGASE
  • NGLY1
  • RAD23B
  • RPS27A
  • SAKS1
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • UBXN1
  • VCP
Bos taurus (cattle)
HS-GAG degradation
  • AGRN
  • GLB1
  • GLB1L
  • GLB1L2
  • GPC1
  • GPC2
  • GPC3
  • GPC4
  • GPC5
  • GUSB
  • HPSE
  • HPSE2
  • IDS
  • IDUA
  • NAGLU
  • SDC1
  • SDC2
  • SDC4
  • SGSH
Bos taurus (cattle)
Lysosomal oligosaccharide catabolism
  • LOC528518
  • MAN2B1
  • MAN2C1
  • MANB
  • MANBA
Bos taurus (cattle)
Insulin receptor signalling cascade
  • GRB10
  • GRB2
  • INS
  • INSR
  • SHC1
  • SOS1
Bos taurus (cattle)
Highly calcium permeable nicotinic acetylcholine receptors
  • CHRNA1
  • CHRNA2
  • CHRNA3
  • CHRNA4
  • CHRNA5
  • CHRNA6
  • CHRNB2
  • CHRNB3
  • CHRNB4
Bos taurus (cattle)
Respiratory electron transport
  • CI-B14-5A
  • COA1
  • COB
  • COII
  • COQ10A
  • COQ10B
  • COX1
  • COX11
  • COX14
  • COX16
  • COX18
  • COX19
  • COX2
  • COX20
  • COX3
  • COX4
  • COX4I1
  • COX5A
  • COX6A1
  • COX6C
  • COX7A2L
  • COX7B
  • COX7C
  • COX7CP1
  • COXII
  • CYC
  • CYC1
  • CYCS
  • CYTB
  • GRIM19
  • LOC100296227
  • LOC101906178
  • LOC783202
  • LRPPRC
  • MT-CO2
  • MT-CYB
  • MT-ND3
  • MT-ND4
  • MT-ND6
  • MTCO2
  • MTCYB
  • MTND3
  • MTND4
  • MTND6
  • NADH3
  • NADH4
  • NADH6
  • ND1
  • ND2
  • ND3
  • ND4
  • ND5
  • ND6
  • NDUFA1
  • NDUFA10
  • NDUFA11
  • NDUFA13
  • NDUFA2
  • NDUFA3
  • NDUFA4
  • NDUFA5
  • NDUFA6
  • NDUFA7
  • NDUFA8
  • NDUFA9
  • NDUFAB1
  • NDUFB1
  • NDUFB10
  • NDUFB11
  • NDUFB2
  • NDUFB3
  • NDUFB5
  • NDUFB6
  • NDUFB7
  • NDUFB8
  • NDUFB9
  • NDUFC1
  • NDUFC2
  • NDUFS1
  • NDUFS2
  • NDUFS3
  • NDUFS4
  • NDUFS5
  • NDUFS6
  • NDUFS7
  • NDUFS8
  • NDUFV1
  • NDUFV2
  • SCO1
  • SCO2
  • SCOD1
  • SURF1
  • TACO1
  • TMEM186
  • UQCR10
  • UQCRB
  • UQCRC1
  • UQCRC2
  • UQCRFS1
  • UQCRH
  • UQCRQ
  • UQOR22
Bos taurus (cattle)
Regulation of TP53 Activity through Phosphorylation
  • AIK
  • AIRK1
  • ARK1
  • ATM
  • ATR
  • ATRIP
  • AURA
  • AURKA
  • AURKB
  • AYK1
  • BARD1
  • BLM
  • BRCA1
  • BRIP1
  • BTAK
  • CCNA1
  • CCNA2
  • CDK2
  • CDK5
  • CDK5R
  • CDK5R1
  • CDKN2
  • CDKN5
  • CHEK2
  • CK2A1
  • CK2N
  • CSNK2A1
  • CSNK2A2
  • CSNK2B
  • DNA2
  • DYRK2
  • EXO1
  • HIPK1
  • HIPK2
  • HUS1
  • IAK1
  • KAT5
  • MAPK11
  • MAPK14
  • MAPKAPK5
  • MDM2
  • MRE11
  • NBN
  • NCK5A
  • NIR
  • NOC2L
  • NUAK1
  • PIN1
  • PLK3
  • PRKAA1
  • PRKAA2
  • PRKAB1
  • PRKAB2
  • PRKAG1
  • PRKAG2
  • PRKAG3
  • PSSALRE
  • RAD1
  • RAD17
  • RAD50
  • RAD9A
  • RAD9B
  • RBBP8
  • RFC2
  • RFC3
  • RFC5
  • RHNO1
  • RMI1
  • RMI2
  • RPA1
  • RPA2
  • RPA3
  • RPS27A
  • SSRP1
  • STK11
  • STK15
  • STK6
  • SUPT16H
  • TAF1
  • TAF10
  • TAF11
  • TAF12
  • TAF15
  • TAF2
  • TAF3
  • TAF4
  • TAF4B
  • TAF5
  • TAF6
  • TAF7L
  • TAF9
  • TAF9B
  • TBP
  • TOP3A
  • TOPBP1
  • TP53
  • TP53INP1
  • TP53RK
  • TPX2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • WRN
Bos taurus (cattle)
Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus
  • BGLAP
  • F10
  • F2
  • F7
  • F9
  • GAS6
  • PROC
  • PROS
  • PROS1
Bos taurus (cattle)
Collagen chain trimerization
  • COL10A1
  • COL11A1
  • COL11A2
  • COL12A1
  • COL13A1
  • COL14A1
  • COL16A1
  • COL17A1
  • COL18A1
  • COL1A1
  • COL1A2
  • COL20A1
  • COL23A1
  • COL26A1
  • COL27A1
  • COL28A1
  • COL2A1
  • COL3A1
  • COL5A1
  • COL5A3
  • COL6A1
  • COL6A2
  • COL6A3
  • COL6A5
  • COL6A6
  • COL8A1
  • COL8A2
Bos taurus (cattle)
Myogenesis
  • ABL1
  • BNIP2
  • BOC
  • CDC42
  • CDH15
  • CDH2
  • CDH4
  • CDON
  • CTNNA1
  • CTNNB1
  • MAPK11
  • MAPK14
  • MEF2B
  • MEF2C
  • MRF4
  • MYF5
  • MYF6
  • MYOD1
  • MYOG
  • SPAG9
  • TCF12
  • TCF3
  • TCF4
Bos taurus (cattle)
Glyoxylate metabolism and glycine degradation
  • AGXT
  • AGXT2
  • ALDH4A1
  • DAO
  • DHDPSL
  • GNMT
  • GOT2
  • GRHPR
  • HAO1
  • HOGA1
Bos taurus (cattle)
Toll Like Receptor 7/8 (TLR7/8) Cascade
  • TLR7
Bos taurus (cattle)
Cytoprotection by HMOX1
  • ABCC1
  • ALB
  • BLVRA
  • BLVRB
  • CHD9
  • COII
  • COX1
  • COX11
  • COX14
  • COX16
  • COX18
  • COX19
  • COX2
  • COX20
  • COX3
  • COX4
  • COX4I1
  • COX5A
  • COX6A1
  • COX6C
  • COX7A2L
  • COX7B
  • COX7C
  • COX7CP1
  • COXII
  • CREBBP
  • CYC
  • CYCS
  • FABP1
  • HBA
  • HBB
  • HDAC3
  • HMOX1
  • HMOX2
  • LOC100296227
  • LOC783202
  • LRPPRC
  • MED1
  • MRP1
  • MT-CO2
  • MTCO2
  • NCOA1
  • NCOA2
  • NCOA6
  • NCOR1
  • NCOR2
  • NDUFA4
  • PPARA
  • RXRA
  • SCAN
  • SCO1
  • SCO2
  • SCOD1
  • SIN3A
  • SIN3B
  • SMARCD3
  • SURF1
  • TACO1
  • TBL1X
  • TGS1
Bos taurus (cattle)
Recycling of bile acids and salts
  • ABCB11
  • ABCC3
  • ALB
  • FABP6
  • NCOA1
  • NCOA2
  • NR1H4
  • OSTA
  • OSTB
  • RXRA
  • SLC10A1
  • SLC10A2
  • SLC27A5
  • SLC51A
  • SLC51B
  • SLCO1A2
  • SLCO1B3
  • STARD5
Bos taurus (cattle)
TRP channels
  • MCOLN1
  • MCOLN2
  • MCOLN3
  • TRP6
  • TRPA1
  • TRPC1
  • TRPC3
  • TRPC4
  • TRPC4AP
  • TRPC5
  • TRPC6
  • TRPC7
  • TRPM4
  • TRPM5
  • TRPM7
  • TRPM8
  • TRPV1
  • TRPV2
  • TRPV3
  • TRPV4
  • TRPV5
  • TRPV6
Bos taurus (cattle)
Disassembly of the destruction complex and recruitment of AXIN to the membrane
  • AMER1
  • APC
  • AXIN1
  • CAV1
  • CSNK1A1
  • CTNNB1
  • DVL1
  • DVL2
  • DVL3
  • FRAT2
  • FZD1
  • FZD2
  • FZD5
  • GSK3B
  • LRP5
  • LRP6
  • PPP2CA
  • PPP2CB
  • PPP2R1A
  • PPP2R1B
  • PPP2R5A
  • PPP2R5B
  • PPP2R5D
  • PPP2R5E
  • WNT1
  • WNT3A
  • WNT8A
  • WNT8B
Bos taurus (cattle)
TCF dependent signaling in response to WNT
  • AXIN1
  • AXIN2
  • CTNNB1
  • RNF146B
  • RPS27A
  • TNKS
  • TNKS2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • USP34
  • WNT1
  • WNT3
  • WNT3A
  • WNT5A
Bos taurus (cattle)
The role of GTSE1 in G2/M progression after G2 checkpoint
  • CCNB1
  • CCNB2
  • CDC2
  • CDK1
  • CDKN1
  • GTSE1
  • MAPRE1
  • PLK1
  • PSMA1
  • PSMA2
  • PSMA3
  • PSMA4
  • PSMA5
  • PSMA6
  • PSMA7
  • PSMA8
  • PSMB1
  • PSMB10
  • PSMB2
  • PSMB3
  • PSMB4
  • PSMB5
  • PSMB6
  • PSMB7
  • PSMB8
  • PSMB9
  • PSMC2
  • PSMC3
  • PSMC4
  • PSMC5
  • PSMC6
  • PSMD1
  • PSMD11
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD3
  • PSMD4
  • PSMD5
  • PSMD6
  • PSMD7
  • PSMD8
  • PSMD9
  • PSME1
  • PSME2
  • PSME4
  • PSMF1
  • RPS27A
  • SUG1
  • TP53
  • TRAP2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Bos taurus (cattle)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

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Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024