GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 26 - 50 of 557 in total
Pathway Name ▼ Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
Transport of inorganic cations/anions and amino acids/oligopeptides
  • CTNS
  • EAAT1
  • GLAST
  • GLAST1
  • SAMC
  • SLC1A1
  • SLC1A2
  • SLC1A3
  • SLC1A6
  • SLC1A7
  • SLC25A26
  • SLC32A1
Bos taurus (cattle)
Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus
  • BGLAP
  • F10
  • F2
  • F7
  • F9
  • GAS6
  • PROC
  • PROS
  • PROS1
Bos taurus (cattle)
Transport of bile salts and organic acids, metal ions and amine compounds
  • CTL2
  • CTL3
  • CTL4
  • SLC14A1
  • SLC14A2
  • SLC44A1
  • SLC44A2
  • SLC44A3
  • SLC44A4
  • SLC44A5
  • SLC47A2
  • SLC5A7
  • TPPT1
  • UT-B
Bos taurus (cattle)
Transport of RCbl within the body
  • ABCC1
  • ABCD4
  • CD320
  • LDLRAP1
  • LMBRD1
  • LRP2
  • MRP1
  • TCN1
  • TCN2
Bos taurus (cattle)
Translocation of ZAP-70 to Immunological synapse
  • BLA-DQB
  • BOLA-DQA1
  • BOLA-DQA2
  • BOLA-DQA5
  • BOLA-DRA
  • BOLA-DRB2
  • BOLA-DRB3
  • BOLA-DYA
  • BOLA-DYB
  • BoLA-DIB
  • BoLA-DRA
  • BoLA-DYB
  • CD247
  • CD3D
  • CD3E
  • CD3G
  • CD4
  • DYB
  • HLA-DRA
  • LCK
  • LOC100848815
  • PTPN22
  • TRAV29-1
  • ZAP70
Bos taurus (cattle)
Transferrin endocytosis and recycling
  • ATP6A1
  • ATP6AP1
  • ATP6B1
  • ATP6B2
  • ATP6C
  • ATP6D
  • ATP6E
  • ATP6G
  • ATP6G1
  • ATP6H
  • ATP6IP1
  • ATP6N1B
  • ATP6S1
  • ATP6S14
  • ATP6V0A1
  • ATP6V0A2
  • ATP6V0A4
  • ATP6V0B
  • ATP6V0C
  • ATP6V0D1
  • ATP6V0D2
  • ATP6V0E
  • ATP6V0E1
  • ATP6V0E2
  • ATP6V1A
  • ATP6V1A1
  • ATP6V1B1
  • ATP6V1B2
  • ATP6V1C1
  • ATP6V1C2
  • ATP6V1E1
  • ATP6V1E2
  • ATP6V1F
  • ATP6V1G1
  • ATP6V1G2
  • ATP6V1G3
  • ATP6V1H
  • HFE
  • LOC101904667
  • MCOLN1
  • STEAP3
  • STEAP4
  • TCIRG1
  • TF
  • TFR2
  • TFRC
  • VATC
  • VATF
  • VPATPD
Bos taurus (cattle)
Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors
  • DEK
  • TFAP2A
Bos taurus (cattle)
Transcriptional regulation by RUNX2
  • CBFB
  • CCNB1
  • CCND1
  • CDC2
  • CDK1
  • CDK4
  • CDKN1
  • PPM1D
  • RUNX2
  • SOX9
Bos taurus (cattle)
Transcriptional and post-translational regulation of MITF-M expression and activity
  • AIMP2
  • CREBBP
  • DARS1
  • EEF1E1
  • EPRS1
  • ERK2
  • GSK3B
  • HINT1
  • IARS
  • IARS1
  • JTV1
  • KARS1
  • KIT
  • KITLG
  • LARS1
  • MAPK1
  • MAPK3
  • MARS1
  • MITF
  • PRKM1
  • QARS
  • QARS1
  • RARS
  • RARS1
  • RPS6KA1
  • SCF
  • WNT3A
  • XPO1
Bos taurus (cattle)
Transcriptional activation of mitochondrial biogenesis
  • ACSS2
  • CYC
  • CYCS
  • GABPA
  • GABPB1
  • GABPB2
  • GLUD1
  • IDH2
  • SIRT3
  • SIRT4
  • SIRT5
  • SOD2
Bos taurus (cattle)
Trafficking and processing of endosomal TLR
  • CNPY3
  • CTSB
  • CTSK
  • CTSL
  • CTSL1
  • CTSS
  • GRP94
  • HSP90B1
  • HSPC4
  • LGMN
  • TLR3
  • TLR7
  • TLR9
  • TRA1
  • UNC93B1
Bos taurus (cattle)
Toll Like Receptor 9 (TLR9) Cascade
  • EEA1
  • PIK3C3
  • PIK3R4
  • TLR9
Bos taurus (cattle)
Toll Like Receptor 7/8 (TLR7/8) Cascade
  • TLR7
Bos taurus (cattle)
Toll Like Receptor 4 (TLR4) Cascade
  • BPI
  • CD14
  • CD18
  • CD180
  • DNM1
  • DNM3
  • ITGAM
  • ITGB2
  • LBP
  • LY86
  • LY96
  • MD-2
  • PLCG2
  • PTPN4
  • TICAM2
  • TLR4
  • TRAM
Bos taurus (cattle)
Toll Like Receptor 10 (TLR10) Cascade
  • TLR10
Bos taurus (cattle)
Tight junction interactions
  • F11R
  • JAM1
  • PARD3
  • PARD6A
  • PARD6B
  • PARD6G
  • PRKCI
Bos taurus (cattle)
Tie2 Signaling
  • ANG1
  • ANG2
  • ANGPT1
  • ANGPT2
  • ANGPT4
  • ANGPTL4
  • DOK2
  • GRB14
  • GRB2
  • GRB7
  • KRAS
  • NRAS
  • PIK3CA
  • PIK3CB
  • PIK3R1
  • PIK3R2
  • PTPN11
  • SHC1
  • SOS1
  • TEK
  • TIE-2
  • TIE2
Bos taurus (cattle)
Thyroxine biosynthesis
  • CGA
  • DUOX1
  • DUOX2
  • IYD
  • SLC5A5
  • TPO
  • TSHB
Bos taurus (cattle)
Thromboxane signalling through TP receptor
  • AAMP
  • GNA11
  • GNA13
  • GNA14
  • GNA15
  • GNAQ
  • GNB1
  • GNB2
  • GNB3
  • GNB4
  • GNB5
  • GNG10
  • GNG11
  • GNG12
  • GNG13
  • GNG2
  • GNG3
  • GNG4
  • GNG5
  • GNG7
  • GNG8
  • GNGT1
  • GNGT12
  • GNGT2
  • GNGT3
  • GNGT5
  • GNGT7
  • GNGT8
  • TBXA2R
Bos taurus (cattle)
The role of GTSE1 in G2/M progression after G2 checkpoint
  • CCNB1
  • CCNB2
  • CDC2
  • CDK1
  • CDKN1
  • GTSE1
  • MAPRE1
  • PLK1
  • PSMA1
  • PSMA2
  • PSMA3
  • PSMA4
  • PSMA5
  • PSMA6
  • PSMA7
  • PSMA8
  • PSMB1
  • PSMB10
  • PSMB2
  • PSMB3
  • PSMB4
  • PSMB5
  • PSMB6
  • PSMB7
  • PSMB8
  • PSMB9
  • PSMC2
  • PSMC3
  • PSMC4
  • PSMC5
  • PSMC6
  • PSMD1
  • PSMD11
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD3
  • PSMD4
  • PSMD5
  • PSMD6
  • PSMD7
  • PSMD8
  • PSMD9
  • PSME1
  • PSME2
  • PSME4
  • PSMF1
  • RPS27A
  • SUG1
  • TP53
  • TRAP2
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
Bos taurus (cattle)
The retinoid cycle in cones (daylight vision)
  • BCP
  • CRALBP
  • DHRS3
  • OPN1LW
  • OPN1SW
  • RBP3
  • RCP
  • RLBP1
Bos taurus (cattle)
The canonical retinoid cycle in rods (twilight vision)
  • ABCA4
  • ABCR
  • CRALBP
  • CYP4V2
  • DHRS9
  • HSD17B6
  • LOC101906939
  • LRAT
  • MYO7A
  • RBP1
  • RBP3
  • RBP4
  • RDH1
  • RDH10
  • RDH11
  • RDH12
  • RDH16
  • RDH5
  • RDHS
  • RHO
  • RLBP1
  • SDR9C7
  • SDRO
  • STRA6
  • TTR
Bos taurus (cattle)
The activation of arylsulfatases
  • ARSA
  • ARSB
  • ARSE
  • ARSG
  • ARSH
  • ARSI
  • ARSK
  • ARSL
  • STS
  • SUMF1
  • SUMF2
Bos taurus (cattle)
The NLRP3 inflammasome
  • HSP90AB1
  • HSPC3
  • HSPCB
  • NLRP3
  • P2RX7
  • PANX
  • PANX1
  • PSTPIP1
  • PYCARD
  • SUGT1
  • TXN
  • TXNIP
Bos taurus (cattle)
Terminal pathway of complement
  • C5
  • C7
  • C8A
  • C8B
  • C9
  • CLU
Bos taurus (cattle)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024