GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 51 - 75 of 250 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
alpha-linolenic acid (ALA) metabolism
  • APA1
  • ELO1
  • ELO2
  • ELO3
  • FEN1
  • FOX3
  • GNS1
  • PAL1
  • PAT2
  • POT1
  • POX3
  • PTE1
  • PXA1
  • SRE1
  • SSH2
  • SUR4
  • TES1
  • VBM1
  • VBM2
Saccharomyces cerevisiae (brewer's yeast)
Regulation of actin dynamics for phagocytic cup formation
  • ACT2
  • ACT4
  • ARC15
  • ARC18
  • ARC19
  • ARC35
  • ARC40
  • ARP2
  • ARP3
  • ARP9
  • CDC42
  • SRO2
  • STE20
  • SWP59
Saccharomyces cerevisiae (brewer's yeast)
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
  • ALG1
  • ALG12
  • ALG2
  • ALG3
  • ALG6
  • ALG7
  • ALG8
  • ALG9
  • ECM39
  • RHK1
  • TUR1
Saccharomyces cerevisiae (brewer's yeast)
HSF1-dependent transactivation
  • DRR2
  • HSC82
  • HSF1
  • HSP82
  • HSP90
  • KOG1
  • LAS24
  • LST8
  • SSA1
  • SSA2
  • SSA3
  • SSA4
  • SSB1
  • SSB2
  • TOR2
  • TSC14
  • YG101
  • YG103
Saccharomyces cerevisiae (brewer's yeast)
Transport of Mature mRNA derived from an Intron-Containing Transcript
  • ANU3
  • ASM4
  • BRR3
  • CBC1
  • CBC2
  • CBP20
  • CBP80
  • CST20
  • FAL1
  • GCR3
  • GLE1
  • GLE2
  • HTN1
  • JIP4
  • MEX67
  • MLP1
  • MTR2
  • MUD13
  • NDC1
  • NIC96
  • NLE3
  • NSP1
  • NSP116
  • NUP1
  • NUP116
  • NUP120
  • NUP133
  • NUP170
  • NUP188
  • NUP192
  • NUP2
  • NUP42
  • NUP57
  • NUP59
  • NUP82
  • NUP84
  • NUP85
  • RAE1
  • RAT2
  • RAT3
  • RAT9
  • RIP1
  • RSS1
  • SAE1
  • SEC13
  • SEH1
  • SFO1
  • STO1
  • SUA6
  • SUT1
  • UIP1
  • UPF3
  • YRA1
  • YRB1
  • YRB2
Saccharomyces cerevisiae (brewer's yeast)
Recycling pathway of L1
  • AMP1
  • APL1
  • APL2
  • APL3
  • APM4
  • APS2
  • CHC1
  • CLC1
  • DAC2
  • FUS3
  • KSS1
  • MPK1
  • SLT2
  • SMK1
  • YAP17
  • YAP80
Saccharomyces cerevisiae (brewer's yeast)
RNA Polymerase II Transcription Initiation
  • BTF1
  • CCL1
  • FUN81
  • KIN28
  • LOM3
  • MPT1
  • RAD25
  • RAD3
  • REM1
  • RIG2
  • RPA7
  • RPB1
  • RPB10
  • RPB11
  • RPB12
  • RPB150
  • RPB2
  • RPB220
  • RPB3
  • RPB4
  • RPB5
  • RPB6
  • RPB7
  • RPB8
  • RPB9
  • RPC10
  • RPC9
  • RPO21
  • RPO22
  • RPO26
  • SPT15
  • SPT3
  • SSL1
  • SSL2
  • SSU71
  • SUA7
  • SUA8
  • TAF1
  • TAF10
  • TAF11
  • TAF12
  • TAF13
  • TAF130
  • TAF145
  • TAF150
  • TAF17
  • TAF19
  • TAF2
  • TAF23
  • TAF25
  • TAF4
  • TAF40
  • TAF48
  • TAF5
  • TAF6
  • TAF60
  • TAF61
  • TAF67
  • TAF68
  • TAF7
  • TAF9
  • TAF90
  • TBP1
  • TFA1
  • TFA2
  • TFB1
  • TFB2
  • TFB3
  • TFB4
  • TFB5
  • TFG1
  • TFG2
  • TOA1
  • TOA2
  • TSG2
  • TSM1
  • UVS112
Saccharomyces cerevisiae (brewer's yeast)
Synthesis of IP3 and IP4 in the cytosol
  • INP53
  • INP54
  • PLC1
  • SJL3
  • SOP2
  • TEP1
Saccharomyces cerevisiae (brewer's yeast)
Miscellaneous transport and binding events
  • ERS1
  • LPE10
  • MFM1
  • OST3
  • OST6
  • RTC2
  • YPQ1
  • YPQ2
  • YPQ3
Saccharomyces cerevisiae (brewer's yeast)
Pentose phosphate pathway
  • EPI1
  • GND1
  • MET19
  • PGM3
  • POS18
  • PRM15
  • RBK1
  • RKI1
  • RPE1
  • SOL3
  • TAL1
  • ZWF1
Saccharomyces cerevisiae (brewer's yeast)
Zinc influx into cells by the SLC39 gene family
  • ATX2
  • YKE4
Saccharomyces cerevisiae (brewer's yeast)
Acyl chain remodelling of PI
  • ALE1
  • LCA1
  • LPT1
  • PLB1
  • PLB2
  • PLB3
  • SLC4
  • SPO1
Saccharomyces cerevisiae (brewer's yeast)
Switching of origins to a post-replicative state
  • CDC46
  • CDC47
  • CDC54
  • HCD21
  • MCM2
  • MCM3
  • MCM4
  • MCM5
  • MCM6
  • MCM7
Saccharomyces cerevisiae (brewer's yeast)
Amino acid transport across the plasma membrane
  • AVT2
  • AVT4
  • ESBP6
  • FSP2
  • IMA2
  • IMA3
  • IMA4
  • MCH2
  • MCH3
  • MCH4
  • MCH5
  • MUP1
  • MUP3
Saccharomyces cerevisiae (brewer's yeast)
Regulation of insulin secretion
  • VPS73
  • YBR241C
Saccharomyces cerevisiae (brewer's yeast)
Transport of inorganic cations/anions and amino acids/oligopeptides
  • AVT1
  • ERS1
  • PET8
Saccharomyces cerevisiae (brewer's yeast)
Digestion of dietary carbohydrate
  • CTS2
Saccharomyces cerevisiae (brewer's yeast)
Synthesis of pyrophosphates in the cytosol
  • ARG82
  • ARGR3
  • DDP1
  • GSL3
  • IPK2
  • KCS1
  • VIP1
Saccharomyces cerevisiae (brewer's yeast)
Triglyceride biosynthesis
  • DGA1
  • GUT1
  • PAH1
  • PAP1
  • SMP2
Saccharomyces cerevisiae (brewer's yeast)
Recycling of bile acids and salts
  • BAT1
  • BPT1
  • FAT1
  • NFT1
  • VMR1
  • YBT1
  • YCF1
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
Ribosomal scanning and start codon recognition
  • CDC33
  • CDC63
  • CRY2
  • GCD11
  • HCR1
  • NAB1
  • NAB1A
  • NIP1
  • NOP13
  • PLC2
  • PRT1
  • RP51A
  • RP51B
  • RP55A
  • RP61R
  • RPG1
  • RPS0A
  • RPS101
  • RPS102
  • RPS10A
  • RPS10B
  • RPS11A
  • RPS11B
  • RPS12
  • RPS13
  • RPS13A
  • RPS13B
  • RPS13C
  • RPS14A
  • RPS14B
  • RPS15
  • RPS16A
  • RPS16AA
  • RPS16B
  • RPS17A
  • RPS17B
  • RPS18A
  • RPS18B
  • RPS19A
  • RPS1B
  • RPS2
  • RPS20
  • RPS21
  • RPS21B
  • RPS22A
  • RPS23A
  • RPS23B
  • RPS24
  • RPS24A
  • RPS24B
  • RPS24EA
  • RPS24EB
  • RPS25A
  • RPS25B
  • RPS26
  • RPS26A
  • RPS26B
  • RPS27A
  • RPS27B
  • RPS28A
  • RPS28B
  • RPS29A
  • RPS3
  • RPS30
  • RPS31
  • RPS31A
  • RPS33B
  • RPS36A
  • RPS37
  • RPS4
  • RPS4A
  • RPS4B
  • RPS5
  • RPS6A
  • RPS6B
  • RPS7A
  • RPS7B
  • RPS8A
  • RPS8B
  • RPS9A
  • RPS9B
  • STM1
  • SUF14
  • SUI2
  • SUI3
  • SUI4
  • SUP38
  • SUP44
  • SUP46
  • TIF1
  • TIF11
  • TIF2
  • TIF211
  • TIF212
  • TIF213
  • TIF3
  • TIF32
  • TIF34
  • TIF35
  • TIF41A
  • TIF41B
  • TIF42
  • TIF45
  • TIF4631
  • TIF5
  • UBI3
  • URP2
  • YS11A
  • YS29A
  • YST1
Saccharomyces cerevisiae (brewer's yeast)
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
  • BTF1
  • CCL1
  • FUN81
  • KIN28
  • LOM3
  • MPT1
  • RAD25
  • RAD3
  • REM1
  • RIG2
  • RPA7
  • RPB1
  • RPB10
  • RPB11
  • RPB12
  • RPB150
  • RPB2
  • RPB220
  • RPB3
  • RPB4
  • RPB5
  • RPB6
  • RPB7
  • RPB8
  • RPB9
  • RPC10
  • RPC9
  • RPO21
  • RPO22
  • RPO26
  • SPT15
  • SPT3
  • SSL1
  • SSL2
  • SSU71
  • SUA7
  • SUA8
  • TAF1
  • TAF10
  • TAF11
  • TAF12
  • TAF13
  • TAF130
  • TAF145
  • TAF150
  • TAF17
  • TAF19
  • TAF2
  • TAF23
  • TAF25
  • TAF4
  • TAF40
  • TAF48
  • TAF5
  • TAF6
  • TAF60
  • TAF61
  • TAF67
  • TAF68
  • TAF7
  • TAF9
  • TAF90
  • TBP1
  • TFA1
  • TFA2
  • TFB1
  • TFB2
  • TFB3
  • TFB4
  • TFB5
  • TFG1
  • TFG2
  • TOA1
  • TOA2
  • TSG2
  • TSM1
  • UVS112
Saccharomyces cerevisiae (brewer's yeast)
HDMs demethylate histones
  • CRT8
  • CSE4
  • CSL2
  • CYC8
  • FMS1
  • GIS1
  • JHD2
  • RPH1
  • SSN6
Saccharomyces cerevisiae (brewer's yeast)
Inhibition of replication initiation of damaged DNA by RB1/E2F1
  • CDC17
  • POL1
  • POL12
  • PRI1
  • PRI2
Saccharomyces cerevisiae (brewer's yeast)
Sensing of DNA Double Strand Breaks
  • ESA1
  • MRE11
  • RAD50
  • TEL1
Saccharomyces cerevisiae (brewer's yeast)

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Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024