Switching of origins to a post-replicative state
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- Bm28
- Cdc21
- Cdc46
- Cdc47
- Cdcl1
- Cdt1
- Gmnn
- Kiaa0030
- Mcm2
- Mcm3
- Mcm4
- Mcm5
- Mcm6
- Mcm7
- Mcmd
- Mcmd2
- Mcmd3
- Mcmd4
- Mcmd5
- Mcmd6
- Mcmd7
- Mis5
- Ris2
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Sensing of DNA Double Strand Breaks
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- Atm
- Htatip
- Kat5
- Kpna2
- Mre11
- Mre11a
- Nbn
- Nbs1
- Rad50
- Rch1
- Tip60
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Resolution of Abasic Sites (AP sites)
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Translesion synthesis by REV1
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- Ibf-1
- Mad2b
- Mad2l2
- Pcna
- Polz
- Recc1
- Rev1
- Rev1l
- Rev3l
- Rev7
- Rfc1
- Rfc2
- Rfc3
- Rfc4
- Rfc5
- Rpa1
- Rpa2
- Rpa3
- Rpa34
- Rps27a
- Sez4
- Uba52
- Uba80
- Ubb
- Ubc
- Ubcep1
- Ubcep2
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Translesion synthesis by POLK
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- Dinb1
- Ibf-1
- Mad2b
- Mad2l2
- Pcna
- Polk
- Polz
- Recc1
- Rev1
- Rev1l
- Rev3l
- Rev7
- Rfc1
- Rfc2
- Rfc3
- Rfc4
- Rfc5
- Rpa1
- Rpa2
- Rpa3
- Rpa34
- Rps27a
- Sez4
- Uba52
- Uba80
- Ubb
- Ubc
- Ubcep1
- Ubcep2
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Translesion synthesis by POLI
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- Ibf-1
- Mad2b
- Mad2l2
- Pcna
- Poli
- Polz
- Rad30b
- Recc1
- Rev1
- Rev1l
- Rev3l
- Rev7
- Rfc1
- Rfc2
- Rfc3
- Rfc4
- Rfc5
- Rpa1
- Rpa2
- Rpa3
- Rpa34
- Rps27a
- Sez4
- Uba52
- Uba80
- Ubb
- Ubc
- Ubcep1
- Ubcep2
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Translesion Synthesis by POLH
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- Arnip
- Chimp
- Gm505
- Ibf-1
- Kiaa1499
- Npl4
- Nploc4
- Pcna
- Polh
- Rad30a
- Rchy1
- Recc1
- Rfc1
- Rfc2
- Rfc3
- Rfc4
- Rfc5
- Rpa1
- Rpa2
- Rpa3
- Rpa34
- Rps27a
- Sprtn
- Uba52
- Uba80
- Ubb
- Ubc
- Ubcep1
- Ubcep2
- Ufd1
- Ufd1l
- Vcp
- Xpv
- Zfp363
- Znf363
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Gap-filling DNA repair synthesis and ligation in GG-NER
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- Dinb1
- Ibf-1
- Pcna
- Pold1
- Pold2
- Pold3
- Pold4
- Pole
- Pole1
- Pole2
- Pole3
- Pole4
- Polk
- Recc1
- Rfc1
- Rfc2
- Rfc3
- Rfc4
- Rfc5
- Rpa1
- Rpa2
- Rpa3
- Rpa34
- Rps27a
- Uba52
- Uba80
- Ubb
- Ubc
- Ubcep1
- Ubcep2
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Termination of translesion DNA synthesis
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- Dinb1
- Efp
- G1p2
- Ibf-1
- Isg15
- Kiaa0190
- Ns5atp9
- Ode-1
- Paf
- Pclaf
- Pcna
- Pold1
- Pold2
- Pold3
- Pold4
- Pole
- Pole1
- Pole2
- Pole3
- Pole4
- Polh
- Poli
- Polk
- Rad30a
- Rad30b
- Recc1
- Rev1
- Rev1l
- Rfc1
- Rfc2
- Rfc3
- Rfc4
- Rfc5
- Rpa1
- Rpa2
- Rpa3
- Rpa34
- Rps27a
- Trim25
- Uba52
- Uba7
- Uba80
- Ubb
- Ubc
- Ubce8
- Ubcep1
- Ubcep2
- Ube1l
- Ube2l6
- Uchrp
- Ucrp
- Usp10
- Usp43
- Xpv
- Zfp147
- Znf147
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Resolution of AP sites via the multiple-nucleotide patch replacement pathway
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Abasic sugar-phosphate removal via the single-nucleotide replacement pathway
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Inhibition of replication initiation of damaged DNA by RB1/E2F1
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- Pola
- Pola1
- Pola2
- Ppp2ca
- Ppp2cb
- Ppp2r1a
- Ppp2r1b
- Ppp2r3a
- Ppp2r3d
- Ppp2r6
- Prim1
- Prim2
- Rb-1
- Rb1
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DNA replication initiation
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- Pola
- Pola1
- Pola2
- Pole
- Pole1
- Pole2
- Pole3
- Pole4
- Prim1
- Prim2
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Polymerase switching
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- Ibf-1
- Pcna
- Pola
- Pola1
- Pola2
- Pold1
- Pold2
- Pold3
- Pold4
- Prim1
- Prim2
- Recc1
- Rfc1
- Rfc2
- Rfc3
- Rfc4
- Rfc5
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Removal of the Flap Intermediate
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- Dna2
- Dna2l
- Fen-1
- Fen1
- Kiaa0083
- Pcna
- Pola
- Pola1
- Pola2
- Pold1
- Pold2
- Pold3
- Pold4
- Prim1
- Prim2
- Rpa1
- Rpa2
- Rpa3
- Rpa34
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Resolution of AP sites via the single-nucleotide replacement pathway
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PCNA-Dependent Long Patch Base Excision Repair
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- Ape
- Apex
- Apex1
- Fen-1
- Fen1
- Ibf-1
- Lig-1
- Lig1
- Pcna
- Polb
- Pold1
- Pold2
- Pold3
- Pold4
- Pole
- Pole1
- Pole2
- Pole3
- Pole4
- Recc1
- Ref1
- Rfc1
- Rfc2
- Rfc3
- Rfc4
- Rfc5
- Rpa1
- Rpa2
- Rpa3
- Rpa34
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Processive synthesis on the lagging strand
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- Lig-1
- Lig1
- Pcna
- Pola
- Pola1
- Pola2
- Pold1
- Pold2
- Pold3
- Pold4
- Prim1
- Prim2
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Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)
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- Lig-1
- Lig1
- Msh2
- Msh3
- Pold1
- Pold2
- Pold3
- Pold4
- Rep-3
- Rpa1
- Rpa2
- Rpa3
- Rpa34
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Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)
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- Exo1
- Gtmbp
- Lig-1
- Lig1
- Mlh1
- Msh2
- Msh6
- Pcna
- Pms2
- Pold1
- Pold2
- Pold3
- Pold4
- Rpa1
- Rpa2
- Rpa3
- Rpa34
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SUMOylation of DNA methylation proteins
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- Dnmt
- Dnmt1
- Dnmt3b
- Met1
- Smt3c
- Smt3h3
- Sumo1
- Ubc9
- Ubce2i
- Ubce9
- Ube2i
- Ubl1
- Uim
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PRC2 methylates histones and DNA
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- Aebp2
- D11Ertd530e
- Dnmt
- Dnmt1
- Dnmt3a
- Dnmt3b
- Eed
- Enx1h
- Ezh2
- Gm14920
- H2a.x
- H2ab1
- H2ab2
- H2ab3
- H2ac11
- H2ac12
- H2ac13
- H2ac15
- H2ac20
- H2ac4
- H2ac6
- H2ac8
- H2afv
- H2afx
- H2aj
- H2av
- H2ax
- H2az2
- H2b-f
- H2b-j
- H2b-l
- H2b-n
- H2bc1
- H2bc11
- H2bc12
- H2bc13
- H2bc14
- H2bc15
- H2bc21
- H2bc26
- H2bc26-ps
- H2bc3
- H2bc4
- H2bc6
- H2bc7
- H2bc8
- H2bc9
- H2bu1
- H2bu1-ps
- H3-143
- H3-3a
- H3-3b
- H3-53
- H3-B
- H3-F
- H3.1-221
- H3.1-291
- H3.1-I
- H3.2
- H3.2-221
- H3.2-614
- H3.2-615
- H3.2-616
- H3.3a
- H3.3b
- H3a
- H3b
- H3c1
- H3c10
- H3c11
- H3c13
- H3c14
- H3c15
- H3c2
- H3c3
- H3c4
- H3c6
- H3c7
- H3c8
- H3f
- H3f3a
- H3f3b
- H3g
- H3h
- H3i
- H4-12
- H4-53
- H4c1
- H4c11
- H4c12
- H4c14
- H4c16
- H4c2
- H4c3
- H4c4
- H4c6
- H4c8
- H4c9
- H4f16
- Hist1h2ab
- Hist1h2ac
- Hist1h2ae
- Hist1h2af
- Hist1h2ag
- Hist1h2ah
- Hist1h2ai
- Hist1h2ak
- Hist1h2an
- Hist1h2ao
- Hist1h2ap
- Hist1h2ba
- Hist1h2bb
- Hist1h2bc
- Hist1h2be
- Hist1h2bf
- Hist1h2bg
- Hist1h2bh
- Hist1h2bj
- Hist1h2bk
- Hist1h2bl
- Hist1h2bm
- Hist1h2bn
- Hist1h2bp
- Hist1h3a
- Hist1h3b
- Hist1h3c
- Hist1h3d
- Hist1h3e
- Hist1h3f
- Hist1h3g
- Hist1h3h
- Hist1h3i
- Hist1h4a
- Hist1h4b
- Hist1h4c
- Hist1h4d
- Hist1h4f
- Hist1h4h
- Hist1h4i
- Hist1h4j
- Hist1h4k
- Hist1h4m
- Hist2h2aa1
- Hist2h2aa2
- Hist2h2ab
- Hist2h2ac
- Hist2h2be
- Hist2h3b
- Hist2h3c1
- Hist2h3c2
- Hist2h3ca1
- Hist2h3ca2
- Hist2h4
- Hist2h4a
- Hist3h2bb
- Hist3h2bb-ps
- Hist4h4
- Hist5-2ax
- Jarid2
- Jmj
- Kiaa0160
- Met1
- Mtf2
- Pcl2
- Pcl3
- Phf1
- Phf19
- Plc1
- Rbap46
- Rbap48
- Rbbp4
- Rbbp7
- Suz12
- Tctex-3
- Tctex3
- Th2b
- Uim
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RHOJ GTPase cycle
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- Arhgap1
- Arhgap10
- Arhgap21
- Arhgap26
- Arhgap32
- Arhgap35
- Arhgap5
- Arhj
- Depdc1b
- Dock8
- Grit
- Grlf1
- Kiaa0621
- Kiaa0712
- Kiaa1415
- Kiaa1424
- Kiaa1722
- Ocrl
- Ocrl1
- Ophn1
- P190A
- Pik3r1
- Pik3r2
- Prex1
- Rhogap5
- Rhoi
- Rhoj
- Rhot
- Rics
- Syde1
- Tc10l
- Tcl
- Trio
- p190ARHOGAP
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Serine biosynthesis
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- Aigp1
- Aigp2
- Aigp3
- Diff33
- Phgdh
- Psa
- Psat
- Psat1
- Psph
- Serinc1
- Serinc2
- Serinc3
- Serinc4
- Serinc5
- Srr
- Tde1
- Tde1l
- Tde2
- Tde2l
- Tms1
- Tms2
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Interconversion of 2-oxoglutarate and 2-hydroxyglutarate
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