GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	November 12, 2024
ECODAB	April 1, 2019

Displaying entries **26 - 50** of **228** in total

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Pathway Name	Protein Name	UniProt ID	Gene Symbol	Organism	GlyTouCan ID
Glycogen breakdown (glycogenolysis)	Glycogen debranching enzyme Glycogen phosphorylase Glycogenin-1 Glycogenin-2 IME2-dependent-signaling protein Phosphoglucomutase 1 Phosphoglucomutase 2	P06738 P33401 P36143 P37012 P46958 P47011 Q06625	GA-5 GAL5 GDB1 GLG1 GLG2 GPH1 IDS2 PGM1 PGM2	Saccharomyces cerevisiae (brewer's yeast)	G58161NS
Regulation of Apoptosis	Dynamin-like GTPase MGM1, mitochondrial Mitochondrial metalloendopeptidase OMA1 Vacuolar protein sorting-associated protein 1	P21576 P32266 P36163	LAM1 MDM17 MGM1 OMA1 SPO15 VPS1	Saccharomyces cerevisiae (brewer's yeast)
Heme degradation	ABC transporter ATP-binding protein/permease VMR1 ABC transporter NFT1 ATP-dependent bile acid permease Bile pigment transporter 1 Metal resistance protein YCF1 Oligomycin resistance ATP-dependent permease YOR1 Probable ATP-dependent permease	P0CE68 P14772 P25371 P32386 P38735 P39109 P53049	ADP1 BAT1 BPT1 NFT1 VMR1 YBT1 YCF1 YOR1 YRS1	Saccharomyces cerevisiae (brewer's yeast)
Atorvastatin ADME	ABC transporter ATP-binding protein/permease VMR1 ABC transporter NFT1 ATP-dependent bile acid permease Bile pigment transporter 1 Metal resistance protein YCF1 Oligomycin resistance ATP-dependent permease YOR1	P0CE68 P14772 P32386 P38735 P39109 P53049	BAT1 BPT1 NFT1 VMR1 YBT1 YCF1 YOR1 YRS1	Saccharomyces cerevisiae (brewer's yeast)
Ciprofloxacin ADME	Probable ATP-dependent permease	P25371	ADP1	Saccharomyces cerevisiae (brewer's yeast)
Acyl chain remodelling of PC	Lysophospholipase 1 Lysophospholipase 2 Lysophospholipase 3 Lysophospholipid acyltransferase Putative meiotic phospholipase SPO1	P39105 P53541 Q03674 Q08108 Q08548	ALE1 LCA1 LPT1 PLB1 PLB2 PLB3 SLC4 SPO1	Saccharomyces cerevisiae (brewer's yeast)
Citric acid cycle (TCA cycle)	Aconitate hydratase, mitochondrial Citrate synthase, mitochondrial Fumarate hydratase, mitochondrial Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial Malate dehydrogenase, cytoplasmic Mitochondrial import inner membrane translocase subunit TIM18 Succinate dehydrogenase [ubiquinone] cytochrome b subunit, mitochondrial Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial	P00890 P08417 P19414 P21801 P22133 P28241 P28834 P33421 P53312 P53598 Q00711 Q08749	ACO1 CIT1 CYB3 FUM1 GLU1 GLU3 IDH1 IDH2 LSC1 LSC2 LYS6 MDH2 SDH SDH1 SDH2 SDH3 SDHA SDHB TIM18	Saccharomyces cerevisiae (brewer's yeast)
Lactose synthesis	Probable metabolite transport protein YBR241C Vacuolar protein sorting-associated protein 73	P38142 P53142	VPS73 YBR241C	Saccharomyces cerevisiae (brewer's yeast)	G58161NS
Synthesis of bile acids and bile salts	C-4 methylsterol oxidase ERG25 Oxysterol-binding protein homolog 1 Oxysterol-binding protein homolog 2 Oxysterol-binding protein homolog 3 Oxysterol-binding protein homolog 4 Oxysterol-binding protein homolog 5	P35843 P35844 P35845 P38713 P53045 Q12451	BSR3 ERG25 FET6 HES1 KES1 OSH1 OSH2 OSH3 OSH4 OSH5 SWH1	Saccharomyces cerevisiae (brewer's yeast)
Phosphate bond hydrolysis by NTPDase proteins	Golgi apyrase Guanosine-diphosphatase	P32621 P40009	GDA1 YND1	Saccharomyces cerevisiae (brewer's yeast)
Digestion of dietary carbohydrate	Sporulation-specific chitinase 2	Q06350	CTS2	Saccharomyces cerevisiae (brewer's yeast)	G80384UV
Synthesis of glycosylphosphatidylinositol (GPI)	GPI ethanolamine phosphate transferase 1 GPI ethanolamine phosphate transferase 2 GPI mannosyltransferase 2 GPI mannosyltransferase 3 GPI mannosyltransferase 4 GPI-anchored wall transfer protein 1 Glycosylphosphatidylinositol anchor biosynthesis protein 11 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase	P23797 P30777 P36051 P38211 P40367 P47026 Q04174 Q06636	FSR2 GPI10 GPI11 GPI12 GPI18 GPI7 GWT1 LAS2 LAS21 MCD4 SAP2 SMP3 SSU21 ZRG16	Saccharomyces cerevisiae (brewer's yeast)
Polymerase switching	DNA polymerase alpha catalytic subunit A DNA polymerase alpha subunit B DNA primase large subunit DNA primase small subunit Proliferating cell nuclear antigen Replication factor C subunit 1 Replication factor C subunit 2 Replication factor C subunit 3 Replication factor C subunit 4 Replication factor C subunit 5	P10363 P13382 P15873 P20457 P38121 P38251 P38629 P38630 P40339 P40348	CDC17 CDC44 POL1 POL12 POL30 PRI1 PRI2 RFC1 RFC2 RFC3 RFC4 RFC5	Saccharomyces cerevisiae (brewer's yeast)
Cargo recognition for clathrin-mediated endocytosis	AP-1 complex subunit beta-1 AP-1 complex subunit mu-1-I AP-2 complex subunit alpha AP-2 complex subunit beta AP-2 complex subunit mu AP-2 complex subunit sigma Autophagy-related protein 27 EH domain-containing and endocytosis protein 1 Epsin-1 Epsin-2 Mannose 6-phosphate receptor-like protein 1 NEDD8-like protein RUB1 Ubiquitin domain-containing protein DSK2	P27351 P34216 P36000 P38065 P46989 P48510 Q00381 Q00776 Q03919 Q05785 Q06815 Q12518 Q99186	AMP1 APL1 APL2 APL3 APM1 APM4 APS2 ATG27 BUD15 DSK2 EDE1 ENT1 ENT2 ETF1 MRL1 RUB1 SHE4 YAP17 YAP54 YAP80	Saccharomyces cerevisiae (brewer's yeast)
SUMOylation of chromatin organization proteins	E3 SUMO-protein ligase SIZ1 Histone H4 Histone deacetylase HDA1 Histone deacetylase RPD3 Nucleoporin ASM4 Nucleoporin NDC1 Nucleoporin NIC96 Nucleoporin NSP1 Nucleoporin NUP116/NSP116 Nucleoporin NUP120 Nucleoporin NUP133 Nucleoporin NUP170 Nucleoporin NUP188 Nucleoporin NUP192 Nucleoporin NUP1 Nucleoporin NUP2 Nucleoporin NUP42 Nucleoporin NUP57 Nucleoporin NUP82 Nucleoporin NUP84 Nucleoporin NUP85 Nucleoporin SEH1 Protein MLP1 Protein transport protein SEC13 Ran-specific GTPase-activating protein 1 Ran-specific GTPase-activating protein 2 SUMO-conjugating enzyme UBC9 SWI/SNF global transcription activator complex subunit SWP82 Ubiquitin-like protein SMT3 mRNA export factor GLE2	P02309 P14907 P20676 P32499 P32500 P32561 P34077 P35729 P36161 P38181 P40066 P40368 P40517 P41920 P43554 P46673 P47054 P48837 P49686 P50623 P52593 P52891 P53011 P53973 Q02455 Q02630 Q04195 Q04491 Q05166 Q12306	ANU3 ASM4 CST20 GLE2 HDA1 HHF1 HHF2 HTN1 MLP1 MOF6 NDC1 NIC96 NLE3 NSP1 NSP116 NUP1 NUP116 NUP120 NUP133 NUP170 NUP188 NUP192 NUP2 NUP42 NUP57 NUP59 NUP82 NUP84 NUP85 RAE1 RAT2 RAT3 RAT9 REC3 RIP1 RPD3 SDI2 SDS6 SEC13 SEH1 SFO1 SIZ1 SMT3 SWP82 UBC9 UIP1 ULL1 YRB1 YRB2	Saccharomyces cerevisiae (brewer's yeast)
RHO GTPases activate PAKs	Cell division control protein 42 Myosin light chain 1 Myosin light chain 2 Myosin-1 Serine/threonine-protein kinase CLA4 Serine/threonine-protein kinase SKM1 Serine/threonine-protein kinase STE20 Synaptonemal complex protein ZIP1	P08964 P19073 P31111 P48562 P53141 Q03497 Q06580 Q12469	CDC42 CLA4 MLC1 MLC2 MYO1 SKM1 SRO2 STE20 ZIP1	Saccharomyces cerevisiae (brewer's yeast)
RHOU GTPase cycle	Actin cytoskeleton-regulatory complex protein END3 Actin cytoskeleton-regulatory complex protein PAN1 Cell division control protein 42 Class E vacuolar protein-sorting machinery protein HSE1 Clathrin heavy chain E3 ubiquitin-protein ligase RSP5 EH domain-containing and endocytosis protein 1 GTP-binding protein RHO5 Increased rDNA silencing protein 4 LAS seventeen-binding protein 1 Myosin-2 Myosin-4 Ras GTPase-activating-like protein IQG1 Serine/threonine-protein kinase CLA4 Serine/threonine-protein kinase SKM1 Serine/threonine-protein kinase STE20 tRNA (34-2'-O)-methyltransferase regulator RTT10	P19073 P19524 P22137 P32492 P32521 P34216 P36115 P38753 P39013 P39940 P48562 P53281 P53879 Q03497 Q08924 Q12280 Q12469	BUD15 CDC42 CDC66 CHC1 CLA4 CYK1 DIM2 EDE1 END3 ERE2 HSE1 IQG1 IRS4 LSB1 MDP1 MDP3 MIP3 MYO2 MYO4 NPI1 PAN1 RHO5 RSP5 RTT10 SHE1 SKM1 SRO2 STE20 TRM734	Saccharomyces cerevisiae (brewer's yeast)
HSP90 chaperone cycle for SHRs	ATP-dependent molecular chaperone HSC82 ATP-dependent molecular chaperone HSP82 DnaJ protein homolog XDJ1 Heat shock protein SSA1 Heat shock protein SSA2 Heat shock protein SSA3 Heat shock protein SSA4 Heat shock protein STI1 J domain-containing protein APJ1 Mitochondrial protein import protein MAS5 Ribosome-associated molecular chaperone SSB1 Ribosome-associated molecular chaperone SSB2	P02829 P09435 P10591 P10592 P11484 P15108 P15705 P22202 P25491 P39102 P40150 P53940	APJ1 HSC82 HSP82 HSP90 MAS5 SSA1 SSA2 SSA3 SSA4 SSB1 SSB2 STI1 XDJ1 YDJ1 YG101 YG103	Saccharomyces cerevisiae (brewer's yeast)
Recycling pathway of L1	AP-1 complex subunit beta-1 AP-2 complex subunit alpha AP-2 complex subunit beta AP-2 complex subunit mu AP-2 complex subunit sigma Clathrin heavy chain Clathrin light chain Mitogen-activated protein kinase FUS3 Mitogen-activated protein kinase KSS1 Mitogen-activated protein kinase SLT2/MPK1 Sporulation-specific mitogen-activated protein kinase SMK1	P14681 P16892 P17891 P22137 P27351 P36000 P38065 P41808 Q00381 Q00772 Q99186	AMP1 APL1 APL2 APL3 APM4 APS2 CHC1 CLC1 DAC2 FUS3 KSS1 MPK1 SLT2 SMK1 YAP17 YAP80	Saccharomyces cerevisiae (brewer's yeast)
Acyl chain remodeling of DAG and TAG	Diacylglycerol O-acyltransferase 1 Monoglyceride lipase	P28321 Q08650	DGA1 YJU3	Saccharomyces cerevisiae (brewer's yeast)
mTORC1-mediated signalling	Eukaryotic initiation factor 4F subunit p150 Eukaryotic translation initiation factor 4B FK506-binding protein 1 Nucleolar protein 13 Serine/threonine-protein kinase YPK3 Small ribosomal subunit protein eS6A Small ribosomal subunit protein eS6B	P0CX37 P0CX38 P20081 P34167 P38070 P39935 P53883	FKB1 FPR1 NOP13 RBP1 RPS101 RPS102 RPS10A RPS10B RPS6A RPS6B STM1 TIF3 TIF42 TIF4631 YPK3	Saccharomyces cerevisiae (brewer's yeast)
Switching of origins to a post-replicative state	DNA replication licensing factor MCM2 DNA replication licensing factor MCM3 DNA replication licensing factor MCM4 DNA replication licensing factor MCM6 DNA replication licensing factor MCM7 Minichromosome maintenance protein 5	P24279 P29469 P29496 P30665 P38132 P53091	CDC46 CDC47 CDC54 HCD21 MCM2 MCM3 MCM4 MCM5 MCM6 MCM7	Saccharomyces cerevisiae (brewer's yeast)
Arachidonate metabolism	Diacylglycerol O-acyltransferase 1 Lysophospholipase 1 Lysophospholipase 2 Lysophospholipase 3 Putative meiotic phospholipase SPO1	P39105 P53541 Q03674 Q08108 Q08650	DGA1 PLB1 PLB2 PLB3 SPO1	Saccharomyces cerevisiae (brewer's yeast)
Metal ion SLC transporters	Copper transport protein CTR2 Vacuolar zinc transporter COT1 Vacuolar zinc transporter ZRC1	P20107 P32798 P38865	COT1 CTR2 ZRC1	Saccharomyces cerevisiae (brewer's yeast)
Rap1 signalling	Bud site selection protein 5 Cell division control protein 25 Guanine nucleotide exchange factor LTE1 Ras-related protein RSR1	P04821 P07866 P13856 P25300	BUD1 BUD5 CDC25 CTN1 EIS4 LTE1 MSI2 RSR1	Saccharomyces cerevisiae (brewer's yeast)

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