GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome November 12, 2024
ECODAB April 1, 2019
Displaying entries 1 - 25 of 270 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID ▲
Regulated proteolysis of p75NTR
  • ADAM17
  • NFKB1
  • NGFR
  • PSEN1
  • PSEN2
  • TNFRSF16
  • TRAF6
Gallus gallus (chicken)
MyD88:TIRAP-dependent cascade initiated on plasma membrane
  • LY96
  • MYD88
  • RCJMB04_17b10
  • RCJMB04_29d24
  • TIRAP
  • TLR1
  • TLR1Lb
  • TLR2-1
  • TLR4
Gallus gallus (chicken)
Iron uptake and transport
  • ACO1
  • CAND1
  • CUL1
  • CYBRD1
  • FTH
  • IREB2
  • PCFT
  • RPS27A
  • SKP1
  • SKP1A
  • SLC40A1
  • SLC46A1
  • UBA80
  • UBB
Gallus gallus (chicken)
Oxidative Stress Induced Senescence
  • BMI1
  • CDK6
  • CDKN2B
  • CDKN2C
  • EED
  • FOS
  • H2A-IX
  • H2AF
  • H2AFX
  • H2AZ2
  • H2B-I
  • H2B-II
  • H2B-III
  • H2B-IV
  • H2B-V
  • H2B-VI
  • H2B-VII
  • H2B-VIII
  • H3-I
  • H3-II
  • H3-III
  • H3-IV
  • H3-IX
  • H3-V
  • H3-VI
  • H3-VII
  • H3-VIII
  • H3-X
  • H4-I
  • H4-II
  • H4-III
  • H4-IV
  • H4-V
  • H4-VI
  • H4-VII
  • HIST1H2B5L
  • JNK2
  • LOC100859381
  • LOC426037
  • MAP2K3
  • MAP2K4
  • MAP3K5
  • MAPK14
  • MAPK8
  • MAPK9
  • MAPKAPK2
  • MAPKAPK3
  • PCGF4
  • RBBP4
  • RNF2
  • TXN
  • cdk6
Gallus gallus (chicken)
TLR4 cascade
  • Cd14
  • LY96
  • TLR4
Gallus gallus (chicken)
Response to elevated platelet cytosolic Ca2+
  • PRKCA
  • PRKCB
Gallus gallus (chicken)
SHC-mediated cascade:FGFR2
  • CEK3
  • FGF-18
  • FGF-3
  • FGF1
  • FGF10
  • FGF18
  • FGF2
  • FGF23
  • FGF3
  • FGF4
  • FGF6
  • FGF7
  • FGF8
  • FGFR2
  • Fgf16
  • Fgf7
  • GRB2
  • HRAS
  • HRAS1
  • KRAS
  • NRAS
  • SHC1
  • SOS1
Gallus gallus (chicken)
P2Y receptors
  • LPAR4
  • P2RY1
  • P2RY3
Gallus gallus (chicken)
NFG and proNGF binds to p75NTR
  • NGFR
  • TNFRSF16
Gallus gallus (chicken)
G alpha (q) signalling events
  • ADRA1A
  • ADRA1B
  • ADRA1D
  • AGTR1
  • ASPR
  • BDKRB1
  • BRS3.5
  • CCK1R
  • CCKAR
  • CCL26
  • CCL4
  • CCLL4
  • CCLi10
  • CCLi7
  • CCLi8
  • CCLi9
  • CCXCR1-L
  • CHRM5
  • CX3CL1
  • CYSLTR1
  • CYSLTR2
  • EDN2
  • EDNRA
  • F2RL1
  • F2RL2
  • GCG
  • GHRL
  • GNA11
  • GNAQ
  • GNB1
  • GNB3
  • GNB4
  • GNG10
  • GNG12
  • GNG13
  • GNG2
  • GNG5
  • GNGT2
  • GNRH1
  • GNRHR1/III
  • GPR103
  • GPR132
  • GPR39
  • GPR65
  • GRM1
  • GRM5
  • GRP
  • HCRT
  • HRH1
  • HTR2A
  • HTR2B
  • HTR2C
  • HTR2b
  • LPAR1
  • LPAR3
  • LPAR4
  • MLNR
  • MT
  • NMB
  • NMBR
  • NMS
  • NMU
  • NMUR1
  • NMUR2
  • NPFF1
  • NPSR1
  • NTSR1
  • OXT
  • OXTR
  • P2RY1
  • P2RY3
  • PIK3R1
  • PIK3R2
  • PLCB1
  • PLCB4
  • PMCH
  • PROK2
  • PTAFR
  • PTGFR
  • QRFPR
  • RGS17
  • RGS18
  • RGS2
  • RGS4
  • RGS5
  • SCYA4
  • TAC1
  • TACR1
  • TACR3
  • TBXA2R
  • TRH
  • TRHR
  • TRIO
  • UTS2
  • UTS2R
  • ghr
  • ghre
  • tac1
Gallus gallus (chicken)
HDACs deacetylate histones
  • GATAD2A
  • H2A-IX
  • H2AFX
  • H2B-I
  • H2B-II
  • H2B-III
  • H2B-IV
  • H2B-V
  • H2B-VI
  • H2B-VII
  • H2B-VIII
  • H3-I
  • H3-II
  • H3-III
  • H3-IV
  • H3-V
  • H3-VI
  • H3-VII
  • H3-VIII
  • H4-I
  • H4-II
  • H4-III
  • H4-IV
  • H4-V
  • H4-VI
  • H4-VII
  • HDAC1
  • HDAC1A
  • HIST1H2B5L
  • HMG20B
  • LOC426037
  • MTA3
  • PHF21A
  • RBBP4
  • TBL1XR1
Gallus gallus (chicken)
Metal ion SLC transporters
  • NRAMP1
  • SLC11A1
  • SLC40A1
  • SLC41A1
  • SLC41A2
Gallus gallus (chicken)
Negative regulation of FGFR3 signaling
  • CEK2
  • FGF-18
  • FGF1
  • FGF18
  • FGF2
  • FGF23
  • FGF4
  • FGF8
  • FGFR3
  • FRS2
  • Fgf16
  • GRB2
  • PTPN11
  • RPS27A
  • UBA80
  • UBB
Gallus gallus (chicken)
Nicotinate metabolism
  • BST1
  • CD38
  • NADK
  • NMNAT1
  • NMNAT2
Gallus gallus (chicken)
NTF3 activates NTRK3 signaling
  • NTF3
  • NTRK3
  • TRKC
Gallus gallus (chicken)
Formation of the beta-catenin:TCF transactivating complex
  • BCL9
  • CDC73
  • CTNNB1
  • H2A-IX
  • H2AF
  • H2AFX
  • H2AZ2
  • H2B-I
  • H2B-II
  • H2B-III
  • H2B-IV
  • H2B-V
  • H2B-VI
  • H2B-VII
  • H2B-VIII
  • H3-I
  • H3-II
  • H3-III
  • H3-IV
  • H3-IX
  • H3-V
  • H3-VI
  • H3-VII
  • H3-VIII
  • H3-X
  • H4-I
  • H4-II
  • H4-III
  • H4-IV
  • H4-V
  • H4-VI
  • H4-VII
  • HDAC1
  • HDAC1A
  • HIST1H2B5L
  • LEF1
  • LOC100859381
  • LOC426037
  • PYGO1
  • RBBP5
  • RCJMB04_25e24
  • RUVBL1
  • TCF7
  • TLE1
  • TLE3
Gallus gallus (chicken)
Neurotransmitter receptors and postsynaptic signal transmission
  • GLRB
Gallus gallus (chicken)
TNFR2 non-canonical NF-kB pathway
  • ADRM1
  • BAFF
  • CD40L
  • CD40LG
  • PSMA3
  • PSMA4
  • PSMA6
  • PSMA7
  • PSMB1
  • PSMB2
  • PSMB7
  • PSMC2
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD7
  • RCJMB04_14i9
  • RCJMB04_23k2
  • TNFRSF1B
  • TNFSF13B
  • TNFSF5
  • TRAF3
  • cpsmb7
Gallus gallus (chicken)
Metabolism of Angiotensinogen to Angiotensins
  • CTSD
  • MME
Gallus gallus (chicken)
VxPx cargo-targeting to cilium
  • ARF4
  • EXOC2
  • EXOC3
  • EXOC7
  • EXOC8
  • RAB11A
  • RAB8A
  • RHO
Gallus gallus (chicken)
G alpha (s) signalling events
  • ADCYAP1
  • ADCYAP1R1
  • ADORA2B
  • ADRB2
  • ADRB3
  • CALCA
  • CALCRL
  • CGA
  • CRH
  • CRHR1
  • EP4
  • FSH beta
  • FSHB
  • FSHb
  • GCG
  • GHRH
  • GHRHR
  • GLP-1R
  • GLP2R
  • GNAS
  • GNASXL
  • GNB1
  • GNB3
  • GNB4
  • GNG10
  • GNG12
  • GNG13
  • GNG2
  • GNG5
  • GNGT2
  • GPR27
  • GPR39
  • GRK5
  • HRH2
  • HTR4
  • HTR7
  • IAPP
  • LOC107051813
  • MC1R
  • MC4R
  • MC5R
  • Mc1r
  • NPSR1
  • PACAP
  • PDE4D
  • PDE7B
  • PTGER2
  • PTGER4
  • PTH
  • PTH1R
  • PTH2R
  • PTHLH
  • RAMP2
  • RAMP3
  • TSHB
  • VIP
  • VPAC2
Gallus gallus (chicken)
Transcriptional and post-translational regulation of MITF-M expression and activity
  • AIMP1
  • DARS
  • EPRS
  • KIT
  • KITLG
  • RPS6KA
  • RSK
  • SCF
  • SOX10
  • WNT3A
  • XPO1
  • chPKCI
Gallus gallus (chicken)
Miscellaneous transport and binding events
  • ANKH
  • LOC107056693
  • LRRC8A
  • LRRC8C
  • LRRC8D
  • NIPA2
  • NIPAL3
  • PQLC2
  • SLC66A1
Gallus gallus (chicken)
Post-translational modification: synthesis of GPI-anchored proteins
  • ALPL
  • B-FIV
  • BF1
  • BF2
  • BFIV21
  • BST1
  • CNTN5
  • CPM
  • FAR2
  • LOC101747868
  • LY6CLEL
  • LYPD1
  • LYPD6B
  • NRN1
  • NRN1L
  • OPCML
  • PRN-P
  • PRNP
  • RECK
  • RTN4R
  • SPRN
  • TECTB
  • THY1
Gallus gallus (chicken)
Transport of bile salts and organic acids, metal ions and amine compounds
  • SLC44A5
  • SLC5A7
Gallus gallus (chicken)

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Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: February 17, 2025