GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome November 12, 2024
ECODAB April 1, 2019
Displaying entries 1376 - 1400 of 2074 in total
Pathway Name Protein Name ▲ UniProt ID Gene Symbol Organism GlyTouCan ID
DNA methylation
  • AIM
  • CXXC9
  • DNMT
  • DNMT1
  • DNMT3A
  • DNMT3B
  • DNMT3L
  • H2AB1
  • H2AC14
  • H2AC18
  • H2AC19
  • H2AC20
  • H2AC4
  • H2AC6
  • H2AC7
  • H2AC8
  • H2AFA
  • H2AFB1
  • H2AFE
  • H2AFG
  • H2AFJ
  • H2AFL
  • H2AFM
  • H2AFO
  • H2AFQ
  • H2AFV
  • H2AFX
  • H2AJ
  • H2AV
  • H2AX
  • H2AZ2
  • H2BC1
  • H2BC10
  • H2BC11
  • H2BC12
  • H2BC12L
  • H2BC13
  • H2BC14
  • H2BC15
  • H2BC17
  • H2BC21
  • H2BC26
  • H2BC3
  • H2BC4
  • H2BC5
  • H2BC6
  • H2BC7
  • H2BC8
  • H2BC9
  • H2BFA
  • H2BFB
  • H2BFC
  • H2BFD
  • H2BFE
  • H2BFF
  • H2BFG
  • H2BFH
  • H2BFJ
  • H2BFK
  • H2BFL
  • H2BFN
  • H2BFQ
  • H2BFR
  • H2BFS
  • H2BFT
  • H2BS1
  • H2BU1
  • H3-3A
  • H3-3B
  • H3.3A
  • H3.3B
  • H3C1
  • H3C10
  • H3C11
  • H3C12
  • H3C13
  • H3C14
  • H3C15
  • H3C2
  • H3C3
  • H3C4
  • H3C6
  • H3C7
  • H3C8
  • H3F2
  • H3F3
  • H3F3A
  • H3F3B
  • H3FA
  • H3FB
  • H3FC HIST1H3C
  • H3FD
  • H3FF
  • H3FH
  • H3FI
  • H3FJ
  • H3FK
  • H3FL
  • H3FM
  • H4-16
  • H4/A
  • H4/B
  • H4/C
  • H4/D
  • H4/E
  • H4/G
  • H4/H
  • H4/I
  • H4/J
  • H4/K
  • H4/M
  • H4/N
  • H4/O
  • H4C1
  • H4C11
  • H4C12
  • H4C13
  • H4C14
  • H4C15
  • H4C16
  • H4C2
  • H4C3
  • H4C4
  • H4C5
  • H4C6
  • H4C8
  • H4C9
  • H4F2
  • H4FA
  • H4FB
  • H4FC
  • H4FD
  • H4FE
  • H4FG
  • H4FH
  • H4FI
  • H4FJ
  • H4FK
  • H4FM
  • H4FN
  • H4FO
  • HIRIP1
  • HIRIP2
  • HIST1H2AB
  • HIST1H2AC
  • HIST1H2AD
  • HIST1H2AE
  • HIST1H2AJ
  • HIST1H2BA
  • HIST1H2BB
  • HIST1H2BC
  • HIST1H2BD
  • HIST1H2BE
  • HIST1H2BF
  • HIST1H2BG
  • HIST1H2BH
  • HIST1H2BI
  • HIST1H2BJ
  • HIST1H2BK
  • HIST1H2BL
  • HIST1H2BM
  • HIST1H2BN
  • HIST1H2BO
  • HIST1H3A
  • HIST1H3B
  • HIST1H3D
  • HIST1H3E
  • HIST1H3F
  • HIST1H3G
  • HIST1H3H
  • HIST1H3I
  • HIST1H3J
  • HIST1H4A
  • HIST1H4B
  • HIST1H4C
  • HIST1H4D
  • HIST1H4E
  • HIST1H4F
  • HIST1H4H
  • HIST1H4I
  • HIST1H4J
  • HIST1H4K
  • HIST1H4L
  • HIST2H2AA
  • HIST2H2AA3
  • HIST2H2AA4
  • HIST2H2AC
  • HIST2H2BE
  • HIST2H3A
  • HIST2H3C
  • HIST2H3D
  • HIST2H4
  • HIST2H4A
  • HIST2H4B
  • HIST3H2BB
  • HIST4H4
  • ICBP90
  • NP95
  • RNF106
  • TSH2B
  • UHRF1
Homo sapiens (human)
Defective pyroptosis
  • AIM
  • CHET9
  • CXXC9
  • DFNA5
  • DNMT
  • DNMT1
  • DNMT3A
  • DNMT3B
  • EED
  • EZH2
  • GSDME
  • H2AB1
  • H2AC14
  • H2AC18
  • H2AC19
  • H2AC20
  • H2AC4
  • H2AC6
  • H2AC7
  • H2AC8
  • H2AFA
  • H2AFB1
  • H2AFE
  • H2AFG
  • H2AFJ
  • H2AFL
  • H2AFM
  • H2AFO
  • H2AFQ
  • H2AFV
  • H2AFX
  • H2AJ
  • H2AV
  • H2AX
  • H2AZ2
  • H2BC1
  • H2BC10
  • H2BC11
  • H2BC12
  • H2BC12L
  • H2BC13
  • H2BC14
  • H2BC15
  • H2BC17
  • H2BC21
  • H2BC26
  • H2BC3
  • H2BC4
  • H2BC5
  • H2BC6
  • H2BC7
  • H2BC8
  • H2BC9
  • H2BFA
  • H2BFB
  • H2BFC
  • H2BFD
  • H2BFE
  • H2BFF
  • H2BFG
  • H2BFH
  • H2BFJ
  • H2BFK
  • H2BFL
  • H2BFN
  • H2BFQ
  • H2BFR
  • H2BFS
  • H2BFT
  • H2BS1
  • H2BU1
  • H3-3A
  • H3-3B
  • H3.3A
  • H3.3B
  • H3C1
  • H3C10
  • H3C11
  • H3C12
  • H3C13
  • H3C14
  • H3C15
  • H3C2
  • H3C3
  • H3C4
  • H3C6
  • H3C7
  • H3C8
  • H3F2
  • H3F3
  • H3F3A
  • H3F3B
  • H3FA
  • H3FB
  • H3FC HIST1H3C
  • H3FD
  • H3FF
  • H3FH
  • H3FI
  • H3FJ
  • H3FK
  • H3FL
  • H3FM
  • H4-16
  • H4/A
  • H4/B
  • H4/C
  • H4/D
  • H4/E
  • H4/G
  • H4/H
  • H4/I
  • H4/J
  • H4/K
  • H4/M
  • H4/N
  • H4/O
  • H4C1
  • H4C11
  • H4C12
  • H4C13
  • H4C14
  • H4C15
  • H4C16
  • H4C2
  • H4C3
  • H4C4
  • H4C5
  • H4C6
  • H4C8
  • H4C9
  • H4F2
  • H4FA
  • H4FB
  • H4FC
  • H4FD
  • H4FE
  • H4FG
  • H4FH
  • H4FI
  • H4FJ
  • H4FK
  • H4FM
  • H4FN
  • H4FO
  • HIRIP1
  • HIRIP2
  • HIST1H2AB
  • HIST1H2AC
  • HIST1H2AD
  • HIST1H2AE
  • HIST1H2AJ
  • HIST1H2BA
  • HIST1H2BB
  • HIST1H2BC
  • HIST1H2BD
  • HIST1H2BE
  • HIST1H2BF
  • HIST1H2BG
  • HIST1H2BH
  • HIST1H2BI
  • HIST1H2BJ
  • HIST1H2BK
  • HIST1H2BL
  • HIST1H2BM
  • HIST1H2BN
  • HIST1H2BO
  • HIST1H3A
  • HIST1H3B
  • HIST1H3D
  • HIST1H3E
  • HIST1H3F
  • HIST1H3G
  • HIST1H3H
  • HIST1H3I
  • HIST1H3J
  • HIST1H4A
  • HIST1H4B
  • HIST1H4C
  • HIST1H4D
  • HIST1H4E
  • HIST1H4F
  • HIST1H4H
  • HIST1H4I
  • HIST1H4J
  • HIST1H4K
  • HIST1H4L
  • HIST2H2AA
  • HIST2H2AA3
  • HIST2H2AA4
  • HIST2H2AC
  • HIST2H2BE
  • HIST2H3A
  • HIST2H3C
  • HIST2H3D
  • HIST2H4
  • HIST2H4A
  • HIST2H4B
  • HIST3H2BB
  • HIST4H4
  • ICERE1
  • JJAZ1
  • KIAA0160
  • KMT6
  • POLA
  • POLA1
  • POLA2
  • PRIM1
  • PRIM2
  • PRIM2A
  • RBAP46
  • RBAP48
  • RBBP4
  • RBBP7
  • SUZ12
  • TSH2B
Homo sapiens (human)
PRC2 methylates histones and DNA
  • AEBP2
  • AIM
  • CHET9
  • CXXC9
  • DNMT
  • DNMT1
  • DNMT3A
  • DNMT3B
  • EED
  • EZH2
  • H2AB1
  • H2AC14
  • H2AC18
  • H2AC19
  • H2AC20
  • H2AC4
  • H2AC6
  • H2AC7
  • H2AC8
  • H2AFA
  • H2AFB1
  • H2AFE
  • H2AFG
  • H2AFJ
  • H2AFL
  • H2AFM
  • H2AFO
  • H2AFQ
  • H2AFV
  • H2AFX
  • H2AJ
  • H2AV
  • H2AX
  • H2AZ2
  • H2BC1
  • H2BC10
  • H2BC11
  • H2BC12
  • H2BC12L
  • H2BC13
  • H2BC14
  • H2BC15
  • H2BC17
  • H2BC21
  • H2BC26
  • H2BC3
  • H2BC4
  • H2BC5
  • H2BC6
  • H2BC7
  • H2BC8
  • H2BC9
  • H2BFA
  • H2BFB
  • H2BFC
  • H2BFD
  • H2BFE
  • H2BFF
  • H2BFG
  • H2BFH
  • H2BFJ
  • H2BFK
  • H2BFL
  • H2BFN
  • H2BFQ
  • H2BFR
  • H2BFS
  • H2BFT
  • H2BS1
  • H2BU1
  • H3-3A
  • H3-3B
  • H3.3A
  • H3.3B
  • H3C1
  • H3C10
  • H3C11
  • H3C12
  • H3C13
  • H3C14
  • H3C15
  • H3C2
  • H3C3
  • H3C4
  • H3C6
  • H3C7
  • H3C8
  • H3F2
  • H3F3
  • H3F3A
  • H3F3B
  • H3FA
  • H3FB
  • H3FC HIST1H3C
  • H3FD
  • H3FF
  • H3FH
  • H3FI
  • H3FJ
  • H3FK
  • H3FL
  • H3FM
  • H4-16
  • H4/A
  • H4/B
  • H4/C
  • H4/D
  • H4/E
  • H4/G
  • H4/H
  • H4/I
  • H4/J
  • H4/K
  • H4/M
  • H4/N
  • H4/O
  • H4C1
  • H4C11
  • H4C12
  • H4C13
  • H4C14
  • H4C15
  • H4C16
  • H4C2
  • H4C3
  • H4C4
  • H4C5
  • H4C6
  • H4C8
  • H4C9
  • H4F2
  • H4FA
  • H4FB
  • H4FC
  • H4FD
  • H4FE
  • H4FG
  • H4FH
  • H4FI
  • H4FJ
  • H4FK
  • H4FM
  • H4FN
  • H4FO
  • HIRIP1
  • HIRIP2
  • HIST1H2AB
  • HIST1H2AC
  • HIST1H2AD
  • HIST1H2AE
  • HIST1H2AJ
  • HIST1H2BA
  • HIST1H2BB
  • HIST1H2BC
  • HIST1H2BD
  • HIST1H2BE
  • HIST1H2BF
  • HIST1H2BG
  • HIST1H2BH
  • HIST1H2BI
  • HIST1H2BJ
  • HIST1H2BK
  • HIST1H2BL
  • HIST1H2BM
  • HIST1H2BN
  • HIST1H2BO
  • HIST1H3A
  • HIST1H3B
  • HIST1H3D
  • HIST1H3E
  • HIST1H3F
  • HIST1H3G
  • HIST1H3H
  • HIST1H3I
  • HIST1H3J
  • HIST1H4A
  • HIST1H4B
  • HIST1H4C
  • HIST1H4D
  • HIST1H4E
  • HIST1H4F
  • HIST1H4H
  • HIST1H4I
  • HIST1H4J
  • HIST1H4K
  • HIST1H4L
  • HIST2H2AA
  • HIST2H2AA3
  • HIST2H2AA4
  • HIST2H2AC
  • HIST2H2BE
  • HIST2H3A
  • HIST2H3C
  • HIST2H3D
  • HIST2H4
  • HIST2H4A
  • HIST2H4B
  • HIST3H2BB
  • HIST4H4
  • JARID2
  • JJAZ1
  • JMJ
  • KIAA0160
  • KMT6
  • MTF2
  • PCL1
  • PCL2
  • PCL3
  • PHF1
  • PHF19
  • RBAP46
  • RBAP48
  • RBBP4
  • RBBP7
  • SUZ12
  • TSH2B
Homo sapiens (human)
Gap-filling DNA repair synthesis and ligation in GG-NER
  • CHRAC17
  • DINB1
  • DPE2
  • KIAA0039
  • LIG1
  • LIG3
  • PCNA
  • POLD
  • POLD1
  • POLD2
  • POLD3
  • POLD4
  • POLDS
  • POLE
  • POLE1
  • POLE2
  • POLE3
  • POLE4
  • POLK
  • REPA1
  • REPA2
  • REPA3
  • RFC1
  • RFC140
  • RFC2
  • RFC3
  • RFC4
  • RFC5
  • RPA1
  • RPA14
  • RPA2
  • RPA3
  • RPA32
  • RPA34
  • RPA70
  • RPS27A
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • XRCC1
Homo sapiens (human)
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)
  • COCA2
  • DUC1
  • DUG
  • EXO1
  • EXOI
  • HEX1
  • KIAA0039
  • LIG1
  • MLH1
  • MSH2
  • MSH3
  • PCNA
  • PMS2
  • PMSL2
  • POLD
  • POLD1
  • POLD2
  • POLD3
  • POLD4
  • POLDS
  • REPA1
  • REPA2
  • REPA3
  • RPA1
  • RPA14
  • RPA2
  • RPA3
  • RPA32
  • RPA34
  • RPA70
Homo sapiens (human)
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)
  • COCA2
  • EXO1
  • EXOI
  • GTBP
  • HEX1
  • KIAA0039
  • LIG1
  • MLH1
  • MSH2
  • MSH6
  • PCNA
  • PMS2
  • PMSL2
  • POLD
  • POLD1
  • POLD2
  • POLD3
  • POLD4
  • POLDS
  • REPA1
  • REPA2
  • REPA3
  • RPA1
  • RPA14
  • RPA2
  • RPA3
  • RPA32
  • RPA34
  • RPA70
Homo sapiens (human)
Processive synthesis on the lagging strand
  • KIAA0039
  • LIG1
  • PCNA
  • POLA
  • POLA1
  • POLA2
  • POLD
  • POLD1
  • POLD2
  • POLD3
  • POLD4
  • POLDS
  • PRIM1
  • PRIM2
  • PRIM2A
Homo sapiens (human)
PCNA-Dependent Long Patch Base Excision Repair
  • APE
  • APE1
  • APEX
  • APEX1
  • APX
  • CHRAC17
  • DPE2
  • FEN1
  • HAP1
  • KIAA0039
  • LIG1
  • PCNA
  • POLB
  • POLD
  • POLD1
  • POLD2
  • POLD3
  • POLD4
  • POLDS
  • POLE
  • POLE1
  • POLE2
  • POLE3
  • POLE4
  • RAD2
  • REF1
  • REPA1
  • REPA2
  • REPA3
  • RFC1
  • RFC140
  • RFC2
  • RFC3
  • RFC4
  • RFC5
  • RPA1
  • RPA14
  • RPA2
  • RPA3
  • RPA32
  • RPA34
  • RPA70
Homo sapiens (human)
Early Phase of HIV Life Cycle
  • CYPA
  • FEN1
  • LIG1
  • PPIA
  • RAD2
  • gag
  • gag-pol
  • rev
  • vif
  • vpr
  • vpu
Homo sapiens (human)
Regulation of MITF-M-dependent genes involved in DNA damage repair and senescence
  • EST2
  • LIG1
  • TCS1
  • TERT
  • TRT
Homo sapiens (human)
Resolution of AP sites via the single-nucleotide replacement pathway
  • LIG3
  • POLB
  • XRCC1
Homo sapiens (human)
Defective Mismatch Repair Associated With PMS2
  • COCA2
  • MLH1
  • PMS2
  • PMSL2
Homo sapiens (human)
Defective Mismatch Repair Associated With MLH1
  • COCA2
  • MLH1
  • PMS2
  • PMSL2
Homo sapiens (human)
Defective Mismatch Repair Associated With MSH2
  • DUC1
  • DUG
  • GTBP
  • MSH2
  • MSH3
  • MSH6
Homo sapiens (human)
Defective Mismatch Repair Associated With MSH3
  • DUC1
  • DUG
  • MSH2
  • MSH3
Homo sapiens (human)
Defective Mismatch Repair Associated With MSH6
  • GTBP
  • MSH2
  • MSH6
Homo sapiens (human)
ALKBH2 mediated reversal of alkylation damage
  • ABH2
  • ALKBH2
Homo sapiens (human)
Removal of the Flap Intermediate
  • DNA2
  • DNA2L
  • FEN1
  • KIAA0039
  • KIAA0083
  • PCNA
  • POLA
  • POLA1
  • POLA2
  • POLD
  • POLD1
  • POLD2
  • POLD3
  • POLD4
  • POLDS
  • PRIM1
  • PRIM2
  • PRIM2A
  • RAD2
  • REPA1
  • REPA2
  • REPA3
  • RPA1
  • RPA14
  • RPA2
  • RPA3
  • RPA32
  • RPA34
  • RPA70
Homo sapiens (human)
Polymerase switching
  • KIAA0039
  • PCNA
  • POLA
  • POLA1
  • POLA2
  • POLD
  • POLD1
  • POLD2
  • POLD3
  • POLD4
  • POLDS
  • PRIM1
  • PRIM2
  • PRIM2A
  • RFC1
  • RFC140
  • RFC2
  • RFC3
  • RFC4
  • RFC5
Homo sapiens (human)
DNA replication initiation
  • CHRAC17
  • DPE2
  • POLA
  • POLA1
  • POLA2
  • POLE
  • POLE1
  • POLE2
  • POLE3
  • POLE4
  • PRIM1
  • PRIM2
  • PRIM2A
Homo sapiens (human)
Inhibition of replication initiation of damaged DNA by RB1/E2F1
  • DP1
  • DP2
  • E2F1
  • POLA
  • POLA1
  • POLA2
  • PPP2CA
  • PPP2CB
  • PPP2R1A
  • PPP2R1B
  • PPP2R3B
  • PPP2R3L
  • PRIM1
  • PRIM2
  • PRIM2A
  • RB1
  • RBBP3
  • TFDP1
  • TFDP2
Homo sapiens (human)
Abasic sugar-phosphate removal via the single-nucleotide replacement pathway
  • APE
  • APE1
  • APEX
  • APEX1
  • APX
  • HAP1
  • POLB
  • REF1
Homo sapiens (human)
Resolution of AP sites via the multiple-nucleotide patch replacement pathway
  • APE
  • APE1
  • APEX
  • APEX1
  • APX
  • HAP1
  • POLB
  • REF1
Homo sapiens (human)
Termination of translesion DNA synthesis
  • CHRAC17
  • DINB1
  • DPE2
  • EFP
  • G1P2
  • ISG15
  • KIAA0039
  • KIAA0101
  • KIAA0190
  • NS5ATP9
  • PAF
  • PCLAF
  • PCNA
  • POLD
  • POLD1
  • POLD2
  • POLD3
  • POLD4
  • POLDS
  • POLE
  • POLE1
  • POLE2
  • POLE3
  • POLE4
  • POLH
  • POLI
  • POLK
  • RAD30
  • RAD30A
  • RAD30B
  • REPA1
  • REPA2
  • REPA3
  • REV1
  • REV1L
  • RFC1
  • RFC140
  • RFC2
  • RFC3
  • RFC4
  • RFC5
  • RNF147
  • RPA1
  • RPA14
  • RPA2
  • RPA3
  • RPA32
  • RPA34
  • RPA70
  • RPS27A
  • TRIM25
  • UBA52
  • UBA7
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • UBCH8
  • UBE1L
  • UBE2
  • UBE2L6
  • UCRP
  • USP10
  • USP43
  • XPV
  • ZNF147
Homo sapiens (human)
Translesion Synthesis by POLH
  • ARNIP
  • C1orf124
  • CHIMP
  • DVC1
  • HEL-220
  • HEL-S-70
  • KIAA1499
  • NPL4
  • NPLOC4
  • PCNA
  • PIRH2
  • POLH
  • RAD30
  • RAD30A
  • RCHY1
  • REPA1
  • REPA2
  • REPA3
  • RFC1
  • RFC140
  • RFC2
  • RFC3
  • RFC4
  • RFC5
  • RNF199
  • RPA1
  • RPA14
  • RPA2
  • RPA3
  • RPA32
  • RPA34
  • RPA70
  • RPS27A
  • SPRTN
  • UBA52
  • UBA80
  • UBB
  • UBC
  • UBCEP1
  • UBCEP2
  • UFD1
  • UFD1L
  • VCP
  • XPV
  • ZNF363
Homo sapiens (human)

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International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: December 9, 2024