GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	November 12, 2024
ECODAB	April 1, 2019

Displaying entries **1001 - 1025** of **2074** in total

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Pathway Name	Protein Name ▲	UniProt ID	Gene Symbol	Organism
Anchoring fibril formation	Bone morphogenetic protein 1 Collagen alpha-1(VII) chain Laminin subunit alpha-3 Laminin subunit beta-3 Laminin subunit gamma-2 Tolloid-like protein 1 Tolloid-like protein 2	O43897 P13497 Q02388 Q13751 Q13753 Q16787 Q9Y6L7	BMP1 COL7A1 KIAA0932 LAMA3 LAMB2T LAMB3 LAMC2 LAMNA LAMNB1 LAMNB2 PCOLC TLL TLL1 TLL2	Homo sapiens (human)
Crosslinking of collagen fibrils	Bone morphogenetic protein 1 Lysyl oxidase homolog 1 Lysyl oxidase homolog 2 Lysyl oxidase homolog 3 Lysyl oxidase homolog 4 Peroxidasin homolog Procollagen C-endopeptidase enhancer 1 Protein-lysine 6-oxidase Tolloid-like protein 1 Tolloid-like protein 2	O43897 P13497 P28300 P58215 Q08397 Q15113 Q92626 Q96JB6 Q9Y4K0 Q9Y6L7	BMP1 KIAA0230 KIAA0932 LOX LOXC LOXL LOXL1 LOXL2 LOXL3 LOXL4 MG50 PCOLC PCOLCE PCPE1 PRG2 PXD01 PXDN TLL TLL1 TLL2 VPO VPO1	Homo sapiens (human)
Molecules associated with elastic fibres	Bone morphogenetic protein 10 Bone morphogenetic protein 2 Bone morphogenetic protein 4 Bone morphogenetic protein 7 EGF-containing fibulin-like extracellular matrix protein 1 EGF-containing fibulin-like extracellular matrix protein 2 Fibulin-1 Fibulin-2 Fibulin-5 Growth/differentiation factor 5 Integrin alpha-8 Integrin alpha-V Integrin beta-1 Integrin beta-3 Integrin beta-5 Integrin beta-6 Integrin beta-8 Latent-transforming growth factor beta-binding protein 1 Latent-transforming growth factor beta-binding protein 2 Latent-transforming growth factor beta-binding protein 3 Latent-transforming growth factor beta-binding protein 4 Microfibril-associated glycoprotein 3 Microfibril-associated glycoprotein 4 Microfibrillar-associated protein 2 Microfibrillar-associated protein 5 Transforming growth factor beta-1 proprotein Transforming growth factor beta-2 proprotein Transforming growth factor beta-3 proprotein Vitronectin	O95393 O95967 P01137 P04004 P05106 P05556 P06756 P10600 P12643 P12644 P18075 P18084 P18564 P23142 P26012 P43026 P53708 P55001 P55082 P55083 P61812 P98095 Q12805 Q13361 Q14766 Q14767 Q8N2S1 Q9NS15 Q9UBX5	BMP10 BMP14 BMP2 BMP2A BMP2B BMP4 BMP7 C14orf141 CDMP1 DANCE DVR4 EFEMP1 EFEMP2 FBLN1 FBLN2 FBLN3 FBLN4 FBLN5 FBNL FNRB GDF5 GP3A ITGA8 ITGAV ITGB1 ITGB3 ITGB5 ITGB6 ITGB8 LTBP1 LTBP2 LTBP3 LTBP4 MAGP1 MAGP2 MDF2 MFAP2 MFAP3 MFAP4 MFAP5 MSK12 MSK8 OP1 TGFB TGFB1 TGFB2 TGFB3 VNRA VTN VTNR	Homo sapiens (human)
Specification of primordial germ cells	Bone morphogenetic protein 4 C-X-C chemokine receptor type 4 Eomesodermin homolog Homeobox protein NANOG Methylcytosine dioxygenase TET2 Nanos homolog 3 POU domain, class 5, transcription factor 1 PR domain zinc finger protein 1 Podoplanin Protein CBFA2T2 Transcription factor AP-2 gamma Transcription factor SOX-17	O43439 O75626 O95936 P12644 P60323 P61073 Q01860 Q6N021 Q86YL7 Q92754 Q9H6I2 Q9H9S0	BLIMP1 BMP2B BMP4 CBFA2T2 CXCR4 DVR4 EHT EOMES GP36 KIAA1546 MTGR1 NANOG NANOS3 NOS3 OCT3 OCT4 OTF3 PDPN POU5F1 PRDM1 SOX17 TBR2 TET2 TFAP2C	Homo sapiens (human)
Formation of paraxial mesoderm	Bone morphogenetic protein 4 CREB-binding protein Catenin beta-1 Delta-like protein 1 Delta-like protein 3 Fibroblast growth factor receptor 1 Histone acetyltransferase KAT2A Histone acetyltransferase KAT2B Histone acetyltransferase p300 Lymphoid enhancer-binding factor 1 Mastermind-like domain-containing protein 1 Mastermind-like protein 1 Mastermind-like protein 2 Mastermind-like protein 3 Mesogenin-1 Neurogenic locus notch homolog protein 1 Noggin Protein Wnt-3a Recombining binding protein suppressor of hairless SNW domain-containing protein 1 T-box transcription factor T T-box transcription factor TBX6	A6NI15 O00548 O15178 O95947 P11362 P12644 P35222 P46531 P56704 Q06330 Q09472 Q13253 Q13495 Q13573 Q8IZL2 Q92585 Q92793 Q92830 Q92831 Q96JK9 Q9NYJ7 Q9UJU2	BFGFR BMP2B BMP4 CBP CEK CG1 CREBBP CTNNB CTNNB1 CXorf6 DLL1 DLL3 DVR4 EP300 FGFBR FGFR1 FLG FLT2 GCN5 GCN5L2 HBGFR IGKJRB IGKJRB1 KAT2A KAT2B KIAA0200 KIAA1816 KIAA1819 LEF1 MAML1 MAML2 MAML3 MAMLD1 MSGN1 NOG NOTCH1 P300 PCAF RBPJ RBPJK RBPSUH SKIIP SKIP SNW1 T TAN1 TBX6 TBXT WNT3A	Homo sapiens (human)
Formation of the nephric duct	Bone morphogenetic protein 4 Catenin beta-1 DNA-binding protein inhibitor ID-4 Fibroblast growth factor 2 Histone-lysine N-methyltransferase MECOM Homeobox protein EMX2 Homeobox protein Hox-A6 Homeobox protein Hox-B4 LIM/homeobox protein Lhx1 Nephronectin Paired box protein Pax-2 Paired box protein Pax-8 Placenta-specific gene 8 protein Protein odd-skipped-related 1 Proto-oncogene tyrosine-protein kinase receptor Ret Protocadherin-19 Trans-acting T-cell-specific transcription factor GATA-3 WAP four-disulfide core domain protein 2	P07949 P09038 P12644 P17483 P23771 P31267 P35222 P47928 P48742 Q02962 Q03112 Q04743 Q06710 Q14508 Q6UXI9 Q8TAB3 Q8TAX0 Q9NZF1	BHLHB27 BMP2B BMP4 CDHF12 CDHR16 CTNNB CTNNB1 DVR4 EGFL6L EMX2 EVI1 FGF2 FGFB GATA3 HE4 HOX1B HOX2F HOXA6 HOXB4 ID4 KIAA1313 LHX1 LIM-1 LIM1 MDS1 MECOM NPNT ODD OSR1 PAX2 PAX8 PCDH19 PLAC8 POEM PRDM3 PTC RET WAP5 WFDC2	Homo sapiens (human)
Primitive streak formation	Bone morphogenetic protein 4 Catenin beta-1 E3 ubiquitin-protein ligase TRIM33 Eomesodermin homolog Forkhead box protein H1 Homeobox protein MIXL1 Homeobox protein NANOG Homeobox protein goosecoid Lymphoid enhancer-binding factor 1 Mothers against decapentaplegic homolog 2 Mothers against decapentaplegic homolog 3 Mothers against decapentaplegic homolog 4 POU domain, class 5, transcription factor 1 T-box transcription factor T TATA box-binding protein-like 2 Transcription factor 7 Transcription factor SOX-2	O15178 O75593 O95936 P12644 P35222 P36402 P48431 P56915 P84022 Q01860 Q13485 Q15796 Q6SJ96 Q9H2W2 Q9H9S0 Q9UJU2 Q9UPN9	BMP2B BMP4 CTNNB CTNNB1 DPC4 DVR4 EOMES FAST1 FAST2 FOXH1 GSC KIAA1113 LEF1 MADH2 MADH3 MADH4 MADR2 MIXL MIXL1 NANOG OCT3 OCT4 OTF3 POU5F1 RFG7 SMAD2 SMAD3 SMAD4 SOX2 T TBP2 TBPL2 TBR2 TBXT TCF1 TCF7 TIF1G TRF3 TRIM33	Homo sapiens (human)
Specification of the neural plate border	Bone morphogenetic protein 4 Catenin beta-1 Fibroblast growth factor 4 Homeobox protein DLX-5 Homeobox protein GBX-2 Homeobox protein MSX-1 POU domain, class 5, transcription factor 1 Paired box protein Pax-3 Paired box protein Pax-7 Protein Wnt-3a Transcription factor 7-like 1 Transcription factor AP-2 gamma Transcription factor AP-2-alpha Transcription factor AP-2-beta Transcription factor SOX-2 Transcriptional activator Myb Zinc finger protein ZIC 1	P05549 P08620 P10242 P12644 P23759 P23760 P28360 P35222 P48431 P52951 P56178 P56704 Q01860 Q15915 Q92481 Q92754 Q9HCS4	AP2TF BMP2B BMP4 CTNNB CTNNB1 DLX5 DVR4 FGF4 GBX2 HOX7 HST HSTF1 HUP1 HUP2 KS3 MSX1 MYB OCT3 OCT4 OTF3 PAX3 PAX7 POU5F1 SOX2 TCF3 TCF7L1 TFAP2 TFAP2A TFAP2B TFAP2C WNT3A ZIC ZIC1 ZNF201	Homo sapiens (human)
Formation of the ureteric bud	Bone morphogenetic protein 4 Eyes absent homolog 1 Forkhead box protein C1 Forkhead box protein C2 GDNF family receptor alpha-1 Glial cell line-derived neurotrophic factor Gremlin-1 Homeobox protein Hox-A11 Homeobox protein Hox-C11 Homeobox protein Hox-D11 Homeobox protein SIX1 Homeobox protein SIX2 Integrin alpha-8 Integrin beta-1 Nephronectin Paired box protein Pax-2 Protein Wnt-11 Proto-oncogene tyrosine-protein kinase receptor Ret Roundabout homolog 2 Sal-like protein 1 Slit homolog 2 protein	O43248 O60565 O94813 O96014 P05556 P07949 P12644 P31270 P31277 P39905 P53708 P56159 Q02962 Q12948 Q15475 Q6UXI9 Q99502 Q99958 Q9HCK4 Q9NPC8 Q9NSC2	BMP2B BMP4 CDHF12 CDHR16 CKTSF1B1 DAND2 DRM DVR4 EGFL6L EYA1 FKHL14 FKHL7 FNRB FOXC1 FOXC2 FREAC3 GDNF GDNFRA GFRA1 GREM1 HOX1I HOX3H HOX4F HOXA11 HOXC11 HOXD11 ITGA8 ITGB1 KIAA1568 MDF2 MFH1 MSK12 NPNT PAX2 POEM PTC RET RETL1 ROBO2 SAL1 SALL1 SIX1 SIX2 SLIL3 SLIT2 TRNR1 WNT11 ZNF794	Homo sapiens (human)
Formation of intermediate mesoderm	Bone morphogenetic protein 4 Fibroblast growth factor 2 Forkhead box protein C1 Forkhead box protein C2 LIM/homeobox protein Lhx1 Paired box protein Pax-2 Paired box protein Pax-8 Protein odd-skipped-related 1	P09038 P12644 P48742 Q02962 Q06710 Q12948 Q8TAX0 Q99958	BMP2B BMP4 DVR4 FGF2 FGFB FKHL14 FKHL7 FOXC1 FOXC2 FREAC3 LHX1 LIM-1 LIM1 MFH1 ODD OSR1 PAX2 PAX8	Homo sapiens (human)
Formation of lateral plate mesoderm	Bone morphogenetic protein 4 Forkhead box protein F1 Indian hedgehog protein Sonic hedgehog protein Transcription factor GATA-4	P12644 P43694 Q12946 Q14623 Q15465	BMP2B BMP4 DVR4 FKHL5 FOXF1 FREAC1 GATA4 IHH SHH	Homo sapiens (human)
Transcriptional regulation of brown and beige adipocyte differentiation by EBF2	Bone morphogenetic protein 7 Chromodomain-helicase-DNA-binding protein 3 Chromodomain-helicase-DNA-binding protein 4 Cytochrome c oxidase subunit 7A1, mitochondrial Heterogeneous nuclear ribonucleoprotein U Histone deacetylase 1 Histone deacetylase 2 Histone-binding protein RBBP4 Histone-binding protein RBBP7 Histone-lysine N-methyltransferase PRDM16 Lipid transferase CIDEA Metastasis-associated protein MTA1 Metastasis-associated protein MTA2 Metastasis-associated protein MTA3 Methyl-CpG-binding domain protein 3 Mitochondrial brown fat uncoupling protein 1 Mothers against decapentaplegic homolog 1 Mothers against decapentaplegic homolog 4 Nuclear receptor coactivator 1 Peroxisome proliferator-activated receptor alpha Peroxisome proliferator-activated receptor gamma coactivator 1-alpha Peroxisome proliferator-activated receptor gamma coactivator 1-beta Peroxisome proliferator-activated receptor gamma Retinoic acid receptor RXR-alpha Transcription factor COE2 Transcriptional repressor p66-alpha Transcriptional repressor p66-beta Type II iodothyronine deiodinase Very long chain fatty acid elongase 3 Zinc finger protein 423	O60543 O94776 O95983 P18075 P19793 P24310 P25874 P37231 Q00839 Q07869 Q09028 Q12873 Q13330 Q13485 Q13547 Q14839 Q15788 Q15797 Q16576 Q2M1K9 Q86YN6 Q86YP4 Q8WXI9 Q92769 Q92813 Q9BTC8 Q9HAK2 Q9HAZ2 Q9HB03 Q9UBK2	BHLHE74 BMP7 BSP1 C1orf199 CHD3 CHD4 CIDEA CIG30 COE2 COX7A1 COX7AH DIO2 DPC4 EBF2 ELOVL3 GATAD2A GATAD2B HDAC1 HDAC2 HNRNPU HNRPU ITDI2 KIAA0760 KIAA1150 KIAA1266 KIAA1675 LEM6 MADH1 MADH4 MADR1 MBD3 MEL1 MTA1 MTA1L1 MTA2 MTA3 NCOA1 NPHP14 NR1C1 NR1C3 NR2B1 OAZ OP1 PERC PFM13 PGC1 PGC1A PGC1B PID PPAR PPARA PPARG PPARGC1 PPARGC1A PPARGC1B PRDM16 RBAP46 RBAP48 RBBP4 RBBP7 RPD3L1 RXRA SAFA SLC25A7 SMAD1 SMAD4 SRC1 TXDI2 U21.1 UCP UCP1 ZNF423	Homo sapiens (human)
Toxicity of botulinum toxin type A (botA)	Botulinum neurotoxin type A HA-17 HA-33 protein Ha70 protein NTNHA Synaptic vesicle glycoprotein 2A Synaptic vesicle glycoprotein 2B Synaptic vesicle glycoprotein 2C Synaptosomal-associated protein 25	P0DPI0 P60880 Q45877 Q45878 Q496J9 Q57230 Q7L0J3 Q7L1I2 Q9LBS8	HA HA-17 HA-33 KIAA0735 KIAA0736 KIAA1054 SNAP SNAP25 SV2A SV2B SV2C atx bonT botA ha17 ha34 ha70 ntnha	Homo sapiens (human)
Toxicity of botulinum toxin type B (botB)	Botulinum neurotoxin type B HA-17 HA-33 protein Ha70 protein NTNHA Synaptotagmin-1 Synaptotagmin-2 Vesicle-associated membrane protein 2	P10844 P21579 P63027 Q45877 Q45878 Q57230 Q8N9I0 Q9LBS8	HA HA-17 HA-33 SVP65 SYB2 SYT SYT1 SYT2 VAMP2 botB ha17 ha34 ha70 ntnha	Homo sapiens (human)
Toxicity of botulinum toxin type C (botC)	Botulinum neurotoxin type C Synaptosomal-associated protein 25 Syntaxin-1A Syntaxin-1B	P18640 P60880 P61266 Q16623	SNAP SNAP25 STX1 STX1A STX1B STX1B1 STX1B2	Homo sapiens (human)
Toxicity of botulinum toxin type D (botD)	Botulinum neurotoxin type D Synaptic vesicle glycoprotein 2A Synaptic vesicle glycoprotein 2B Synaptic vesicle glycoprotein 2C Vesicle-associated membrane protein 1 Vesicle-associated membrane protein 2	P19321 P23763 P63027 Q496J9 Q7L0J3 Q7L1I2	KIAA0735 KIAA0736 KIAA1054 SV2A SV2B SV2C SYB1 SYB2 VAMP1 VAMP2 botD	Homo sapiens (human)
Toxicity of botulinum toxin type E (botE)	Botulinum neurotoxin type E NTNHA Synaptic vesicle glycoprotein 2A Synaptic vesicle glycoprotein 2B Synaptosomal-associated protein 25	P60880 Q00496 Q7L0J3 Q7L1I2 Q9LBS8	KIAA0735 KIAA0736 SNAP SNAP25 SV2A SV2B botE ntnha	Homo sapiens (human)
Toxicity of botulinum toxin type F (botF)	Botulinum neurotoxin type F Synaptic vesicle glycoprotein 2A Synaptic vesicle glycoprotein 2B Synaptic vesicle glycoprotein 2C Vesicle-associated membrane protein 1 Vesicle-associated membrane protein 2	P23763 P30996 P63027 Q496J9 Q7L0J3 Q7L1I2	KIAA0735 KIAA0736 KIAA1054 SV2A SV2B SV2C SYB1 SYB2 VAMP1 VAMP2 botF	Homo sapiens (human)
Toxicity of botulinum toxin type G (botG)	Botulinum neurotoxin type G Synaptotagmin-1 Vesicle-associated membrane protein 1 Vesicle-associated membrane protein 2	P21579 P23763 P63027 Q60393	SVP65 SYB1 SYB2 SYT SYT1 VAMP1 VAMP2 botG	Homo sapiens (human)
The fatty acid cycling model	Brain mitochondrial carrier protein 1 Dicarboxylate carrier SLC25A8 Mitochondrial brown fat uncoupling protein 1 Mitochondrial uncoupling protein 4 Putative mitochondrial transporter UCP3	O95258 O95847 P25874 P55851 P55916	BMCP1 SLC25A14 SLC25A27 SLC25A7 SLC25A8 SLC25A9 UCP UCP1 UCP2 UCP3 UCP4 UCP5	Homo sapiens (human)
MECP2 regulates transcription of neuronal ligands	Brain-derived neurotrophic factor Corticoliberin Delta-like protein 1 Histone deacetylase 1 Paired amphipathic helix protein Sin3a Somatostatin	O00548 P06850 P23560 P61278 Q13547 Q96ST3	BDNF CRH DLL1 HDAC1 RPD3L1 SIN3A SST	Homo sapiens (human)
Signaling by cytosolic FGFR1 fusion mutants	Breakpoint cluster region protein Centrosomal protein 43 Cleavage and polyadenylation specificity factor subunit 6 FGFR1 oncogene partner 2 GRB2-associated-binding protein 2 Homeobox protein cut-like 1 Leucine-rich repeat flightless-interacting protein 1 Phosphatidylinositol 3-kinase regulatory subunit alpha Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform Signal transducer and activator of transcription 1-alpha/beta Signal transducer and activator of transcription 3 Signal transducer and activator of transcription 5A Signal transducer and activator of transcription 5B Transcription intermediary factor 1-alpha Unconventional myosin-XVIIIa Zinc finger MYM-type protein 2	O15164 O95684 P11274 P27986 P39880 P40763 P42224 P42229 P42336 P51692 Q16630 Q32MZ4 Q92614 Q9NVK5 Q9UBW7 Q9UQC2	APRF BCR BCR1 CD245 CEP43 CFIM68 CPSF6 CUTL1 CUX1 D22S11 FGFR1OP FGFR1OP2 FIM FOP GAB2 GCF2 GRB1 KIAA0216 KIAA0571 LRRFIP1 MYO18A MYSPDZ PIK3CA PIK3R1 RAMP RNF82 STAT1 STAT3 STAT5 STAT5A STAT5B TIAF1 TIF1 TIF1A TRIM24 TRIP ZMYM2 ZNF198	Homo sapiens (human)
Meiotic recombination	Breast cancer type 1 susceptibility protein Breast cancer type 2 susceptibility protein Cyclin-dependent kinase 2 Cyclin-dependent kinase 4 DNA endonuclease RBBP8 DNA mismatch repair protein Mlh1 DNA mismatch repair protein Mlh3 DNA repair protein RAD50 DNA repair protein RAD51 homolog 1 DNA repair protein RAD51 homolog 3 DNA topoisomerase 3-alpha Double-strand break repair protein MRE11 FIGNL1-interacting regulator of recombination and mitosis Fidgetin-like protein 1 Histone H2A type 1-B/E Histone H2A type 1-C Histone H2A type 1-D Histone H2A type 1-J Histone H2A type 2-A Histone H2A type 2-C Histone H2A-Bbd type 1 Histone H2A.J Histone H2A.V Histone H2AX Histone H2B type 1-A Histone H2B type 1-B Histone H2B type 1-C/E/F/G/I Histone H2B type 1-D Histone H2B type 1-H Histone H2B type 1-J Histone H2B type 1-K Histone H2B type 1-L Histone H2B type 1-M Histone H2B type 1-N Histone H2B type 1-O Histone H2B type 2-E Histone H2B type 3-B Histone H2B type F-S Histone H3.1 Histone H3.1t Histone H3.2 Histone H3.3 Histone H4 Histone-lysine N-methyltransferase PRDM9 Homologous-pairing protein 2 homolog Meiotic nuclear division protein 1 homolog Meiotic recombination protein DMC1/LIM15 homolog Meiotic recombination protein SPO11 MutS protein homolog 4 MutS protein homolog 5 Nibrin RecQ-like DNA helicase BLM Replication protein A 14 kDa subunit Replication protein A 32 kDa subunit Replication protein A 70 kDa DNA-binding subunit Serine-protein kinase ATM Testis-expressed protein 15	O15457 O43196 O43502 O60814 O60934 P04908 P06899 P0C5Y9 P11802 P15927 P16104 P20671 P23527 P24941 P27694 P33778 P35244 P38398 P40692 P49959 P51587 P54132 P57053 P58876 P62805 P62807 P68431 P84243 Q06609 Q13315 Q13472 Q14565 Q16695 Q16777 Q16778 Q6FI13 Q6PIW4 Q71DI3 Q71UI9 Q8N257 Q92878 Q93077 Q93079 Q96A08 Q99708 Q99877 Q99878 Q99879 Q99880 Q9BTM1 Q9BWT6 Q9BXT5 Q9NQV7 Q9NSG2 Q9P2W1 Q9UHC1 Q9Y5K1	APOLO1 ATM BLM BRCA1 BRCA2 C1orf112 CDK2 CDK4 CDKN2 COCA2 CTIP DMC1 DMC1H FACD FANCD1 FIGNL1 FIRRM GAJ H2AB1 H2AC14 H2AC18 H2AC19 H2AC20 H2AC4 H2AC6 H2AC7 H2AC8 H2AFA H2AFB1 H2AFE H2AFG H2AFJ H2AFL H2AFM H2AFO H2AFQ H2AFV H2AFX H2AJ H2AV H2AX H2AZ2 H2BC1 H2BC10 H2BC11 H2BC12 H2BC12L H2BC13 H2BC14 H2BC15 H2BC17 H2BC21 H2BC26 H2BC3 H2BC4 H2BC5 H2BC6 H2BC7 H2BC8 H2BC9 H2BFA H2BFB H2BFC H2BFD H2BFE H2BFF H2BFG H2BFH H2BFJ H2BFK H2BFL H2BFN H2BFQ H2BFR H2BFS H2BFT H2BS1 H2BU1 H3-3A H3-3B H3-4 H3.3A H3.3B H3C1 H3C10 H3C11 H3C12 H3C13 H3C14 H3C15 H3C2 H3C3 H3C4 H3C6 H3C7 H3C8 H3F2 H3F3 H3F3A H3F3B H3FA H3FB H3FC HIST1H3C H3FD H3FF H3FH H3FI H3FJ H3FK H3FL H3FM H3FT H4-16 H4/A H4/B H4/C H4/D H4/E H4/G H4/H H4/I H4/J H4/K H4/M H4/N H4/O H4C1 H4C11 H4C12 H4C13 H4C14 H4C15 H4C16 H4C2 H4C3 H4C4 H4C5 H4C6 H4C8 H4C9 H4F2 H4FA H4FB H4FC H4FD H4FE H4FG H4FH H4FI H4FJ H4FK H4FM H4FN H4FO HIRIP1 HIRIP2 HIST1H2AB HIST1H2AC HIST1H2AD HIST1H2AE HIST1H2AJ HIST1H2BA HIST1H2BB HIST1H2BC HIST1H2BD HIST1H2BE HIST1H2BF HIST1H2BG HIST1H2BH HIST1H2BI HIST1H2BJ HIST1H2BK HIST1H2BL HIST1H2BM HIST1H2BN HIST1H2BO HIST1H3A HIST1H3B HIST1H3D HIST1H3E HIST1H3F HIST1H3G HIST1H3H HIST1H3I HIST1H3J HIST1H4A HIST1H4B HIST1H4C HIST1H4D HIST1H4E HIST1H4F HIST1H4H HIST1H4I HIST1H4J HIST1H4K HIST1H4L HIST2H2AA HIST2H2AA3 HIST2H2AA4 HIST2H2AC HIST2H2BE HIST2H3A HIST2H3C HIST2H3D HIST2H4 HIST2H4A HIST2H4B HIST3H2BB HIST3H3 HIST4H4 HNGS1 HOP2 LIM15 MLH1 MLH3 MND1 MRE11 MRE11A MSH4 MSH5 NBN NBS NBS1 P95 PFM6 PRDM9 PSMC3IP RAD50 RAD51 RAD51A RAD51C RAD51L2 RBBP8 RECA RECQ2 RECQL3 REPA1 REPA2 REPA3 RNF53 RPA1 RPA14 RPA2 RPA3 RPA32 RPA34 RPA70 SPO11 TBPIP TEX15 TOP3 TOP3A TSH2B	Homo sapiens (human)
TP53 Regulates Transcription of DNA Repair Genes	Breast cancer type 1 susceptibility protein CDK-activating kinase assembly factor MAT1 Cellular tumor antigen p53 Cyclic AMP-dependent transcription factor ATF-2 Cyclin-H Cyclin-K Cyclin-T1 Cyclin-T2 Cyclin-dependent kinase 12 Cyclin-dependent kinase 13 Cyclin-dependent kinase 7 Cyclin-dependent kinase 9 DNA damage-binding protein 2 DNA mismatch repair protein Mlh1 DNA mismatch repair protein Msh2 DNA repair protein RAD51 homolog 4 DNA-directed RNA polymerase II subunit RPB11-a DNA-directed RNA polymerase II subunit RPB1 DNA-directed RNA polymerase II subunit RPB2 DNA-directed RNA polymerase II subunit RPB3 DNA-directed RNA polymerase II subunit RPB4 DNA-directed RNA polymerase II subunit RPB7 DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Elongin-A2 Elongin-A Elongin-B Elongin-C FACT complex subunit SPT16 FACT complex subunit SSRP1 Fanconi anemia group C protein Fanconi anemia group D2 protein Fanconi anemia group I protein General transcription and DNA repair factor IIH helicase subunit XPD General transcription and DNA repair factor IIH helicase/translocase subunit XPB General transcription factor IIF subunit 1 General transcription factor IIF subunit 2 General transcription factor IIH subunit 1 General transcription factor IIH subunit 2 General transcription factor IIH subunit 3 General transcription factor IIH subunit 4 General transcription factor IIH subunit 5 Mediator of DNA damage checkpoint protein 1 Mismatch repair endonuclease PMS2 Negative elongation factor A Negative elongation factor B Negative elongation factor C/D Negative elongation factor E Protein c-Fos RNA polymerase II elongation factor ELL RNA polymerase II subunit A C-terminal domain phosphatase Serine-protein kinase ATM Serine/threonine-protein kinase ATR Serine/threonine-protein kinase Chk1 Transcription elongation factor A protein 1 Transcription elongation factor SPT4 Transcription elongation factor SPT5 Transcription factor Jun	O00267 O14757 O15514 O60563 O60583 O75771 O75909 P01100 P04637 P05412 P13984 P15336 P18074 P18615 P19387 P19388 P19447 P23193 P24928 P30876 P32780 P35269 P36954 P38398 P40692 P43246 P50613 P50750 P51946 P51948 P52434 P52435 P53803 P54278 P55199 P61218 P62487 P62875 P63272 Q00597 Q08945 Q13315 Q13535 Q13888 Q13889 Q14004 Q14241 Q14676 Q15369 Q15370 Q6ZYL4 Q8IXH7 Q8IYF1 Q8WX92 Q92466 Q92759 Q9BXW9 Q9H3P2 Q9NVI1 Q9NYV4 Q9Y5B0 Q9Y5B9	ATF2 ATM ATR BRCA1 BTF2 BTF2P44 C19orf17 C6orf175 CAK CAK1 CAP35 CCNH CCNK CCNT1 CCNT2 CDC2L CDC2L4 CDC2L5 CDK12 CDK13 CDK7 CDK9 CDKN7 CHED CHEK1 CHK1 COBRA1 COCA2 CPR4 CREB2 CREBP1 CRK7 CRKRS CTDP1 DDB2 ELL ELOA ELOA2 ELOB ELOC ERCC2 ERCC3 FAC FACC FACD FACT140 FACT80 FACTP140 FANCC FANCD2 FANCI FCP1 FOS FRP1 G0S7 GTF2F1 GTF2F2 GTF2H1 GTF2H2 GTF2H3 GTF2H4 GTF2H5 GTF2S JUN KIAA0170 KIAA0904 KIAA1182 KIAA1791 KIAA1794 MAT1 MDC1 MLH1 MNAT1 MO15 MSH2 NELFA NELFB NELFCD NELFD NELFE NFBD1 P53 PMS2 PMSL2 POLR2 POLR2A POLR2B POLR2C POLR2D POLR2E POLR2F POLR2G POLR2H POLR2I POLR2J POLR2J1 POLR2K POLR2L POLRF RAD51D RAD51L3 RAP30 RAP74 RD RDBP RNF53 RNF66 RPB7 SPT4H SPT5 SPT5H SSRP1 STK1 SUPT16H SUPT4H SUPT4H1 SUPT5H TAK TCEA1 TCEB1 TCEB2 TCEB3 TCEB3B TCEB3L TFIIS TH1 TH1L TP53 TTDA WHSC2 XPB XPBC XPD XPDC	Homo sapiens (human)
HDR through MMEJ (alt-NHEJ)	Breast cancer type 2 susceptibility protein DNA endonuclease RBBP8 DNA ligase 3 DNA polymerase theta DNA repair protein RAD50 DNA repair protein RAD52 homolog DNA repair protein XRCC1 Double-strand break repair protein MRE11 Flap endonuclease 1 Nibrin Poly [ADP-ribose] polymerase 1 Poly [ADP-ribose] polymerase 2	O60934 O75417 P09874 P18887 P39748 P43351 P49916 P49959 P51587 Q92878 Q99708 Q9UGN5	ADPRT ADPRT2 ADPRTL2 BRCA2 CTIP FACD FANCD1 FEN1 HNGS1 LIG3 MRE11 MRE11A NBN NBS NBS1 P95 PARP1 PARP2 POLH POLQ PPOL RAD2 RAD50 RAD52 RBBP8 XRCC1	Homo sapiens (human)

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